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Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species
The temperate and herbaceous genus Vicia L. is a member of the legume tribe Fabeae of the subfamily Papilionoideae. The genus Vicia comprises 166 annual or perennial species distributed mainly in Europe, Asia, and North America, but also extending to the temperate regions of South America and tropic...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272350/ https://www.ncbi.nlm.nih.gov/pubmed/25608853 http://dx.doi.org/10.3390/molecules20011543 |
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author | Raveendar, Sebastin Lee, Gi-An Jeon, Young-Ah Lee, Yun Jeong Lee, Jung-Ro Cho, Gyu-Taek Cho, Joon-Hyeong Park, Jong-Hyun Ma, Kyung-Ho Chung, Jong-Wook |
author_facet | Raveendar, Sebastin Lee, Gi-An Jeon, Young-Ah Lee, Yun Jeong Lee, Jung-Ro Cho, Gyu-Taek Cho, Joon-Hyeong Park, Jong-Hyun Ma, Kyung-Ho Chung, Jong-Wook |
author_sort | Raveendar, Sebastin |
collection | PubMed |
description | The temperate and herbaceous genus Vicia L. is a member of the legume tribe Fabeae of the subfamily Papilionoideae. The genus Vicia comprises 166 annual or perennial species distributed mainly in Europe, Asia, and North America, but also extending to the temperate regions of South America and tropical Africa. The use of simple sequence repeat (SSR) markers for Vicia species has not been investigated as extensively as for other crop species. In this study, we assessed the potential for cross-species amplification of cDNA microsatellite markers developed from common vetch (Vicia sativa subsp. sativa). For cross-species amplification of the SSRs, amplification was carried out with genomic DNA isolated from two to eight accessions of 22 different Vicia species. For individual species or subspecies, the transferability rates ranged from 33% for V. ervilia to 82% for V. sativa subsp. nigra with an average rate of 52.0%. Because the rate of successful SSR marker amplification generally correlates with genetic distance, these SSR markers are potentially useful for analyzing genetic relationships between or within Vicia species. |
format | Online Article Text |
id | pubmed-6272350 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62723502018-12-28 Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species Raveendar, Sebastin Lee, Gi-An Jeon, Young-Ah Lee, Yun Jeong Lee, Jung-Ro Cho, Gyu-Taek Cho, Joon-Hyeong Park, Jong-Hyun Ma, Kyung-Ho Chung, Jong-Wook Molecules Communication The temperate and herbaceous genus Vicia L. is a member of the legume tribe Fabeae of the subfamily Papilionoideae. The genus Vicia comprises 166 annual or perennial species distributed mainly in Europe, Asia, and North America, but also extending to the temperate regions of South America and tropical Africa. The use of simple sequence repeat (SSR) markers for Vicia species has not been investigated as extensively as for other crop species. In this study, we assessed the potential for cross-species amplification of cDNA microsatellite markers developed from common vetch (Vicia sativa subsp. sativa). For cross-species amplification of the SSRs, amplification was carried out with genomic DNA isolated from two to eight accessions of 22 different Vicia species. For individual species or subspecies, the transferability rates ranged from 33% for V. ervilia to 82% for V. sativa subsp. nigra with an average rate of 52.0%. Because the rate of successful SSR marker amplification generally correlates with genetic distance, these SSR markers are potentially useful for analyzing genetic relationships between or within Vicia species. MDPI 2015-01-16 /pmc/articles/PMC6272350/ /pubmed/25608853 http://dx.doi.org/10.3390/molecules20011543 Text en © 2015 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Communication Raveendar, Sebastin Lee, Gi-An Jeon, Young-Ah Lee, Yun Jeong Lee, Jung-Ro Cho, Gyu-Taek Cho, Joon-Hyeong Park, Jong-Hyun Ma, Kyung-Ho Chung, Jong-Wook Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title | Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title_full | Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title_fullStr | Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title_full_unstemmed | Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title_short | Cross-Amplification of Vicia sativa subsp. sativa Microsatellites across 22 Other Vicia Species |
title_sort | cross-amplification of vicia sativa subsp. sativa microsatellites across 22 other vicia species |
topic | Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272350/ https://www.ncbi.nlm.nih.gov/pubmed/25608853 http://dx.doi.org/10.3390/molecules20011543 |
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