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Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing
Flower blooming is a critical and complicated plant developmental process in flowering plants. However, insufficient information is available about the complex network that regulates flower blooming in Jasminum sambac. In this study, we used the RNA-Seq platform to analyze the molecular regulation o...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272439/ https://www.ncbi.nlm.nih.gov/pubmed/26065837 http://dx.doi.org/10.3390/molecules200610734 |
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author | Li, Yong-Hua Zhang, Wei Li, Yong |
author_facet | Li, Yong-Hua Zhang, Wei Li, Yong |
author_sort | Li, Yong-Hua |
collection | PubMed |
description | Flower blooming is a critical and complicated plant developmental process in flowering plants. However, insufficient information is available about the complex network that regulates flower blooming in Jasminum sambac. In this study, we used the RNA-Seq platform to analyze the molecular regulation of flower blooming in J. sambac by comparing the transcript profiles at two flower developmental stages: budding and blooming. A total of 4577 differentially-expressed genes (DEGs) were identified between the two floral stages. The Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses revealed that the DEGs in the “oxidation-reduction process”, “extracellular region”, “steroid biosynthesis”, “glycosphingolipid biosynthesis”, “plant hormone signal transduction” and “pentose and glucuronate interconversions” might be associated with flower development. A total of 103 and 92 unigenes exhibited sequence similarities to the known flower development and floral scent genes from other plants. Among these unigenes, five flower development and 19 floral scent unigenes exhibited at least four-fold differences in expression between the two stages. Our results provide abundant genetic resources for studying the flower blooming mechanisms and molecular breeding of J. sambac. |
format | Online Article Text |
id | pubmed-6272439 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62724392018-12-31 Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing Li, Yong-Hua Zhang, Wei Li, Yong Molecules Article Flower blooming is a critical and complicated plant developmental process in flowering plants. However, insufficient information is available about the complex network that regulates flower blooming in Jasminum sambac. In this study, we used the RNA-Seq platform to analyze the molecular regulation of flower blooming in J. sambac by comparing the transcript profiles at two flower developmental stages: budding and blooming. A total of 4577 differentially-expressed genes (DEGs) were identified between the two floral stages. The Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses revealed that the DEGs in the “oxidation-reduction process”, “extracellular region”, “steroid biosynthesis”, “glycosphingolipid biosynthesis”, “plant hormone signal transduction” and “pentose and glucuronate interconversions” might be associated with flower development. A total of 103 and 92 unigenes exhibited sequence similarities to the known flower development and floral scent genes from other plants. Among these unigenes, five flower development and 19 floral scent unigenes exhibited at least four-fold differences in expression between the two stages. Our results provide abundant genetic resources for studying the flower blooming mechanisms and molecular breeding of J. sambac. MDPI 2015-06-10 /pmc/articles/PMC6272439/ /pubmed/26065837 http://dx.doi.org/10.3390/molecules200610734 Text en © 2015 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Li, Yong-Hua Zhang, Wei Li, Yong Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title | Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title_full | Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title_fullStr | Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title_full_unstemmed | Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title_short | Transcriptomic Analysis of Flower Blooming in Jasminum sambac through De Novo RNA Sequencing |
title_sort | transcriptomic analysis of flower blooming in jasminum sambac through de novo rna sequencing |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272439/ https://www.ncbi.nlm.nih.gov/pubmed/26065837 http://dx.doi.org/10.3390/molecules200610734 |
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