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Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets
Piper kadsura is a vine-like medicinal plant which is widely used in clinical treatment. However, P. kadsura is often substituted by other materials in the markets, thereby causing health risks. In this study, 38 P. kadsura samples and eight sequences from GenBank, including a closely-related specie...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274197/ https://www.ncbi.nlm.nih.gov/pubmed/27626403 http://dx.doi.org/10.3390/molecules21091221 |
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author | Yu, Ning Gu, Hong Wei, Yulong Zhu, Ning Wang, Yanli Zhang, Haiping Zhu, Yue Zhang, Xin Ma, Chao Sun, Aidong |
author_facet | Yu, Ning Gu, Hong Wei, Yulong Zhu, Ning Wang, Yanli Zhang, Haiping Zhu, Yue Zhang, Xin Ma, Chao Sun, Aidong |
author_sort | Yu, Ning |
collection | PubMed |
description | Piper kadsura is a vine-like medicinal plant which is widely used in clinical treatment. However, P. kadsura is often substituted by other materials in the markets, thereby causing health risks. In this study, 38 P. kadsura samples and eight sequences from GenBank, including a closely-related species and common adulterants were collected. This study aimed to identify an effective DNA barcode from four popular DNA loci for P. kadsura authentication. The success rates of PCR amplification, sequencing, and sequence acquisition of matK were 10.5%, 75%, and 7.9%, respectively; for rbcL they were 89.5%, 8.8%, and 7.9%, respectively; ITS2 rates were 86.8%, 3.0%, and 2.6%, respectively, while for psbA-trnH they were all 100%, which is much higher than for the other three loci. The sequences were aligned using Muscle, genetic distances were computed using MEGA 5.2.2, and barcoding gap was performed using TAXON DNA. Phylogenetic analysis showed that psbA-trnH could clearly distinguish P. kadsura from its closely related species and the common adulterant. psbA-trnH was then used to evaluate the fake proportions of P. kadsura. Results showed that 18.4% of P. kadsura samples were fake, indicating that adulterant species exist in the Chinese markets. Two-dimensional DNA barcoding imaging of P. kadsura was conducted, which was beneficial to the management of P. kadsura. We conclude that the psbA-trnH region is a powerful tool for P. kadsura identification and supervision in the current medicine markets. |
format | Online Article Text |
id | pubmed-6274197 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62741972018-12-28 Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets Yu, Ning Gu, Hong Wei, Yulong Zhu, Ning Wang, Yanli Zhang, Haiping Zhu, Yue Zhang, Xin Ma, Chao Sun, Aidong Molecules Article Piper kadsura is a vine-like medicinal plant which is widely used in clinical treatment. However, P. kadsura is often substituted by other materials in the markets, thereby causing health risks. In this study, 38 P. kadsura samples and eight sequences from GenBank, including a closely-related species and common adulterants were collected. This study aimed to identify an effective DNA barcode from four popular DNA loci for P. kadsura authentication. The success rates of PCR amplification, sequencing, and sequence acquisition of matK were 10.5%, 75%, and 7.9%, respectively; for rbcL they were 89.5%, 8.8%, and 7.9%, respectively; ITS2 rates were 86.8%, 3.0%, and 2.6%, respectively, while for psbA-trnH they were all 100%, which is much higher than for the other three loci. The sequences were aligned using Muscle, genetic distances were computed using MEGA 5.2.2, and barcoding gap was performed using TAXON DNA. Phylogenetic analysis showed that psbA-trnH could clearly distinguish P. kadsura from its closely related species and the common adulterant. psbA-trnH was then used to evaluate the fake proportions of P. kadsura. Results showed that 18.4% of P. kadsura samples were fake, indicating that adulterant species exist in the Chinese markets. Two-dimensional DNA barcoding imaging of P. kadsura was conducted, which was beneficial to the management of P. kadsura. We conclude that the psbA-trnH region is a powerful tool for P. kadsura identification and supervision in the current medicine markets. MDPI 2016-09-12 /pmc/articles/PMC6274197/ /pubmed/27626403 http://dx.doi.org/10.3390/molecules21091221 Text en © 2016 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yu, Ning Gu, Hong Wei, Yulong Zhu, Ning Wang, Yanli Zhang, Haiping Zhu, Yue Zhang, Xin Ma, Chao Sun, Aidong Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title | Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title_full | Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title_fullStr | Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title_full_unstemmed | Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title_short | Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets |
title_sort | suitable dna barcoding for identification and supervision of piper kadsura in chinese medicine markets |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274197/ https://www.ncbi.nlm.nih.gov/pubmed/27626403 http://dx.doi.org/10.3390/molecules21091221 |
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