Cargando…
An integrated analysis of genes and functional pathways for aggression in human and rodent models
Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehe...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274606/ https://www.ncbi.nlm.nih.gov/pubmed/29858598 http://dx.doi.org/10.1038/s41380-018-0068-7 |
_version_ | 1783377653057716224 |
---|---|
author | Zhang-James, Yanli Fernàndez-Castillo, Noèlia Hess, Jonathan L Malki, Karim Glatt, Stephen J Cormand, Bru Faraone, Stephen V |
author_facet | Zhang-James, Yanli Fernàndez-Castillo, Noèlia Hess, Jonathan L Malki, Karim Glatt, Stephen J Cormand, Bru Faraone, Stephen V |
author_sort | Zhang-James, Yanli |
collection | PubMed |
description | Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehensive view of the complex genetics underlying aggression, we undertook an integrated, cross-species approach. We focused on human and rodent models to derive eight gene lists from three main categories of genetic evidence: two sets of genes identified in GWAS studies, four sets implicated by transcriptome-wide studies of rodent models, and two sets of genes with causal evidence from online Mendelian inheritance in man (OMIM) and knockout (KO) mice reports. These gene sets were evaluated for overlap and pathway enrichment to extract their similarities and differences. We identified enriched common pathways such as the G-protein coupled receptor (GPCR) signaling pathway, axon guidance, reelin signaling in neurons, and ERK/MAPK signaling. Also, individual genes were ranked based on their cumulative weights to quantify their importance as risk factors for aggressive behavior, which resulted in 40 top-ranked and highly interconnected genes. The results of our cross-species and integrated approach provide insights into the genetic etiology of aggression. |
format | Online Article Text |
id | pubmed-6274606 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62746062019-10-26 An integrated analysis of genes and functional pathways for aggression in human and rodent models Zhang-James, Yanli Fernàndez-Castillo, Noèlia Hess, Jonathan L Malki, Karim Glatt, Stephen J Cormand, Bru Faraone, Stephen V Mol Psychiatry Article Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehensive view of the complex genetics underlying aggression, we undertook an integrated, cross-species approach. We focused on human and rodent models to derive eight gene lists from three main categories of genetic evidence: two sets of genes identified in GWAS studies, four sets implicated by transcriptome-wide studies of rodent models, and two sets of genes with causal evidence from online Mendelian inheritance in man (OMIM) and knockout (KO) mice reports. These gene sets were evaluated for overlap and pathway enrichment to extract their similarities and differences. We identified enriched common pathways such as the G-protein coupled receptor (GPCR) signaling pathway, axon guidance, reelin signaling in neurons, and ERK/MAPK signaling. Also, individual genes were ranked based on their cumulative weights to quantify their importance as risk factors for aggressive behavior, which resulted in 40 top-ranked and highly interconnected genes. The results of our cross-species and integrated approach provide insights into the genetic etiology of aggression. Nature Publishing Group UK 2018-06-01 2019 /pmc/articles/PMC6274606/ /pubmed/29858598 http://dx.doi.org/10.1038/s41380-018-0068-7 Text en © The Author(s) 2018 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Zhang-James, Yanli Fernàndez-Castillo, Noèlia Hess, Jonathan L Malki, Karim Glatt, Stephen J Cormand, Bru Faraone, Stephen V An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title | An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title_full | An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title_fullStr | An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title_full_unstemmed | An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title_short | An integrated analysis of genes and functional pathways for aggression in human and rodent models |
title_sort | integrated analysis of genes and functional pathways for aggression in human and rodent models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274606/ https://www.ncbi.nlm.nih.gov/pubmed/29858598 http://dx.doi.org/10.1038/s41380-018-0068-7 |
work_keys_str_mv | AT zhangjamesyanli anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT fernandezcastillonoelia anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT hessjonathanl anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT malkikarim anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT glattstephenj anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT cormandbru anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT faraonestephenv anintegratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT zhangjamesyanli integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT fernandezcastillonoelia integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT hessjonathanl integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT malkikarim integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT glattstephenj integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT cormandbru integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels AT faraonestephenv integratedanalysisofgenesandfunctionalpathwaysforaggressioninhumanandrodentmodels |