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An integrated analysis of genes and functional pathways for aggression in human and rodent models

Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehe...

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Autores principales: Zhang-James, Yanli, Fernàndez-Castillo, Noèlia, Hess, Jonathan L, Malki, Karim, Glatt, Stephen J, Cormand, Bru, Faraone, Stephen V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274606/
https://www.ncbi.nlm.nih.gov/pubmed/29858598
http://dx.doi.org/10.1038/s41380-018-0068-7
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author Zhang-James, Yanli
Fernàndez-Castillo, Noèlia
Hess, Jonathan L
Malki, Karim
Glatt, Stephen J
Cormand, Bru
Faraone, Stephen V
author_facet Zhang-James, Yanli
Fernàndez-Castillo, Noèlia
Hess, Jonathan L
Malki, Karim
Glatt, Stephen J
Cormand, Bru
Faraone, Stephen V
author_sort Zhang-James, Yanli
collection PubMed
description Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehensive view of the complex genetics underlying aggression, we undertook an integrated, cross-species approach. We focused on human and rodent models to derive eight gene lists from three main categories of genetic evidence: two sets of genes identified in GWAS studies, four sets implicated by transcriptome-wide studies of rodent models, and two sets of genes with causal evidence from online Mendelian inheritance in man (OMIM) and knockout (KO) mice reports. These gene sets were evaluated for overlap and pathway enrichment to extract their similarities and differences. We identified enriched common pathways such as the G-protein coupled receptor (GPCR) signaling pathway, axon guidance, reelin signaling in neurons, and ERK/MAPK signaling. Also, individual genes were ranked based on their cumulative weights to quantify their importance as risk factors for aggressive behavior, which resulted in 40 top-ranked and highly interconnected genes. The results of our cross-species and integrated approach provide insights into the genetic etiology of aggression.
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spelling pubmed-62746062019-10-26 An integrated analysis of genes and functional pathways for aggression in human and rodent models Zhang-James, Yanli Fernàndez-Castillo, Noèlia Hess, Jonathan L Malki, Karim Glatt, Stephen J Cormand, Bru Faraone, Stephen V Mol Psychiatry Article Human genome-wide association studies (GWAS), transcriptome analyses of animal models, and candidate gene studies have advanced our understanding of the genetic architecture of aggressive behaviors. However, each of these methods presents unique limitations. To generate a more confident and comprehensive view of the complex genetics underlying aggression, we undertook an integrated, cross-species approach. We focused on human and rodent models to derive eight gene lists from three main categories of genetic evidence: two sets of genes identified in GWAS studies, four sets implicated by transcriptome-wide studies of rodent models, and two sets of genes with causal evidence from online Mendelian inheritance in man (OMIM) and knockout (KO) mice reports. These gene sets were evaluated for overlap and pathway enrichment to extract their similarities and differences. We identified enriched common pathways such as the G-protein coupled receptor (GPCR) signaling pathway, axon guidance, reelin signaling in neurons, and ERK/MAPK signaling. Also, individual genes were ranked based on their cumulative weights to quantify their importance as risk factors for aggressive behavior, which resulted in 40 top-ranked and highly interconnected genes. The results of our cross-species and integrated approach provide insights into the genetic etiology of aggression. Nature Publishing Group UK 2018-06-01 2019 /pmc/articles/PMC6274606/ /pubmed/29858598 http://dx.doi.org/10.1038/s41380-018-0068-7 Text en © The Author(s) 2018 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhang-James, Yanli
Fernàndez-Castillo, Noèlia
Hess, Jonathan L
Malki, Karim
Glatt, Stephen J
Cormand, Bru
Faraone, Stephen V
An integrated analysis of genes and functional pathways for aggression in human and rodent models
title An integrated analysis of genes and functional pathways for aggression in human and rodent models
title_full An integrated analysis of genes and functional pathways for aggression in human and rodent models
title_fullStr An integrated analysis of genes and functional pathways for aggression in human and rodent models
title_full_unstemmed An integrated analysis of genes and functional pathways for aggression in human and rodent models
title_short An integrated analysis of genes and functional pathways for aggression in human and rodent models
title_sort integrated analysis of genes and functional pathways for aggression in human and rodent models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274606/
https://www.ncbi.nlm.nih.gov/pubmed/29858598
http://dx.doi.org/10.1038/s41380-018-0068-7
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