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Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors
Organic compounds are often exposed to the environment, and have an adverse effect on the environment and human health in the form of mixtures, rather than as single chemicals. In this paper, we try to establish reliable and developed classical quantitative structure–activity relationship (QSAR) mod...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274693/ https://www.ncbi.nlm.nih.gov/pubmed/30384505 http://dx.doi.org/10.3390/ijms19113423 |
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author | Wang, Ting Tang, Lili Luan, Feng Cordeiro, M. Natália D. S. |
author_facet | Wang, Ting Tang, Lili Luan, Feng Cordeiro, M. Natália D. S. |
author_sort | Wang, Ting |
collection | PubMed |
description | Organic compounds are often exposed to the environment, and have an adverse effect on the environment and human health in the form of mixtures, rather than as single chemicals. In this paper, we try to establish reliable and developed classical quantitative structure–activity relationship (QSAR) models to evaluate the toxicity of 99 binary mixtures. The derived QSAR models were built by forward stepwise multiple linear regression (MLR) and nonlinear radial basis function neural networks (RBFNNs) using the hypothetical descriptors, respectively. The statistical parameters of the MLR model provided were N (number of compounds in training set) = 79, R(2) (the correlation coefficient between the predicted and observed activities)= 0.869, LOOq(2) (leave-one-out correlation coefficient) = 0.864, F (Fisher’s test) = 165.494, and RMS (root mean square) = 0.599 for the training set, and N(ext) (number of compounds in external test set) = 20, R(2) = 0.853, [Formula: see text] (leave-one-out correlation coefficient for test set)= 0.825, F = 30.861, and RMS = 0.691 for the external test set. The RBFNN model gave the statistical results, namely N = 79, R(2) = 0.925, LOOq(2) = 0.924, F = 950.686, RMS = 0.447 for the training set, and N(ext) = 20, R(2) = 0.896, [Formula: see text] = 0.890, F = 155.424, RMS = 0.547 for the external test set. Both of the MLR and RBFNN models were evaluated by some statistical parameters and methods. The results confirm that the built models are acceptable, and can be used to predict the toxicity of the binary mixtures. |
format | Online Article Text |
id | pubmed-6274693 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62746932018-12-15 Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors Wang, Ting Tang, Lili Luan, Feng Cordeiro, M. Natália D. S. Int J Mol Sci Article Organic compounds are often exposed to the environment, and have an adverse effect on the environment and human health in the form of mixtures, rather than as single chemicals. In this paper, we try to establish reliable and developed classical quantitative structure–activity relationship (QSAR) models to evaluate the toxicity of 99 binary mixtures. The derived QSAR models were built by forward stepwise multiple linear regression (MLR) and nonlinear radial basis function neural networks (RBFNNs) using the hypothetical descriptors, respectively. The statistical parameters of the MLR model provided were N (number of compounds in training set) = 79, R(2) (the correlation coefficient between the predicted and observed activities)= 0.869, LOOq(2) (leave-one-out correlation coefficient) = 0.864, F (Fisher’s test) = 165.494, and RMS (root mean square) = 0.599 for the training set, and N(ext) (number of compounds in external test set) = 20, R(2) = 0.853, [Formula: see text] (leave-one-out correlation coefficient for test set)= 0.825, F = 30.861, and RMS = 0.691 for the external test set. The RBFNN model gave the statistical results, namely N = 79, R(2) = 0.925, LOOq(2) = 0.924, F = 950.686, RMS = 0.447 for the training set, and N(ext) = 20, R(2) = 0.896, [Formula: see text] = 0.890, F = 155.424, RMS = 0.547 for the external test set. Both of the MLR and RBFNN models were evaluated by some statistical parameters and methods. The results confirm that the built models are acceptable, and can be used to predict the toxicity of the binary mixtures. MDPI 2018-10-31 /pmc/articles/PMC6274693/ /pubmed/30384505 http://dx.doi.org/10.3390/ijms19113423 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Ting Tang, Lili Luan, Feng Cordeiro, M. Natália D. S. Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title | Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title_full | Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title_fullStr | Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title_full_unstemmed | Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title_short | Prediction of the Toxicity of Binary Mixtures by QSAR Approach Using the Hypothetical Descriptors |
title_sort | prediction of the toxicity of binary mixtures by qsar approach using the hypothetical descriptors |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6274693/ https://www.ncbi.nlm.nih.gov/pubmed/30384505 http://dx.doi.org/10.3390/ijms19113423 |
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