Cargando…

Co-expression Gene Network Analysis and Functional Module Identification in Bamboo Growth and Development

Bamboo is one of the fastest-growing non-timber forest plants. Moso bamboo (Phyllostachys edulis) is the most economically valuable bamboo in Asia, especially in China. With the release of the whole-genome sequence of moso bamboo, there are increasing demands for refined annotation of bamboo genes....

Descripción completa

Detalles Bibliográficos
Autores principales:	Ma, Xuelian, Zhao, Hansheng, Xu, Wenying, You, Qi, Yan, Hengyu, Gao, Zhimin, Su, Zhen
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277748/ https://www.ncbi.nlm.nih.gov/pubmed/30542370 http://dx.doi.org/10.3389/fgene.2018.00574

Ejemplares similares

Refinement of bamboo genome annotations through integrative analyses of transcriptomic and epigenomic data
por: Ma, Xuelian, et al.
Publicado: (2021)

Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
por: Wang, Jiongliang, et al.
Publicado: (2020)

Identification and Expression Analyses of Invertase Genes in Moso Bamboo Reveal Their Potential Drought Stress Functions
por: Zhu, Chenglei, et al.
Publicado: (2021)

An Integrated Regulatory Network of mRNAs, microRNAs, and lncRNAs Involved in Nitrogen Metabolism of Moso Bamboo
por: Yuan, Tingting, et al.
Publicado: (2022)

The miR166–mRNA network regulates vascular tissue differentiation in Moso bamboo
por: Li, Ying, et al.
Publicado: (2022)

PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins
por: Yang, Jiaotong, et al.
Publicado: (2018)

Identification and Characterization of MicroRNAs in the Leaf of Ma Bamboo (Dendrocalamus latiflorus) by Deep Sequencing
por: Zhao, Hansheng, et al.
Publicado: (2013)

Discovery and Comparative Profiling of microRNAs in Representative Monopodial Bamboo (Phyllostachys edulis) and Sympodial Bamboo (Dendrocalamus latiflorus)
por: Zhao, Hansheng, et al.
Publicado: (2014)

BambooGDB: a bamboo genome database with functional annotation and an analysis platform
por: Zhao, Hansheng, et al.
Publicado: (2014)

croFGD: Catharanthus roseus Functional Genomics Database
por: She, Jiajie, et al.
Publicado: (2019)

Genome-wide identification and expression analysis of the MYB transcription factor in moso bamboo (Phyllostachys edulis)
por: Yang, Kebin, et al.
Publicado: (2019)

Chromatin State-Based Analysis of Epigenetic H3K4me3 Marks of Arabidopsis in Response to Dark Stress
por: Yan, Hengyu, et al.
Publicado: (2019)

Whole-Genome and Expression Analyses of Bamboo Aquaporin Genes Reveal Their Functions Involved in Maintaining Diurnal Water Balance in Bamboo Shoots
por: Sun, Huayu, et al.
Publicado: (2018)

HpeNet: Co-expression Network Database for de novo Transcriptome Assembly of Paeonia lactiflora Pall
por: Sheng, Minghao, et al.
Publicado: (2020)

Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice
por: Zhao, Nannan, et al.
Publicado: (2020)

GURFAP: A Platform for Gene Function Analysis in Glycyrrhiza Uralensis
por: Yang, Jiaotong, et al.
Publicado: (2022)

Identification of circRNAs in the Liver of Whitespotted Bamboo Shark (Chiloscyllium plagiosum)
por: Zhang, Wenjie, et al.
Publicado: (2020)

Small RNA Profile in Moso Bamboo Root and Leaf Obtained by High Definition Adapters
por: Xu, Ping, et al.
Publicado: (2014)

Identification of miRNA-mediated gene regulatory networks in L-methionine exposure counteracts cocaine-conditioned place preference in mice
por: Wang, Yan, et al.
Publicado: (2023)

Weighted Gene Co-expression Network Analysis of Endometriosis and Identification of Functional Modules Associated With Its Main Hallmarks
por: Bakhtiarizadeh, Mohammad Reza, et al.
Publicado: (2018)

Identification of key genes in late-onset major depressive disorder through a co-expression network module
por: Yao, Ping-An, et al.
Publicado: (2022)

Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots
por: Xu, Xiurong, et al.
Publicado: (2019)

Identification and expression analysis of the glycosyltransferase GT43 family members in bamboo reveal their potential function in xylan biosynthesis during rapid growth
por: Li, Zhen, et al.
Publicado: (2021)

SorghumFDB: sorghum functional genomics database with multidimensional network analysis
por: Tian, Tian, et al.
Publicado: (2016)

Genome-wide identification and co-expression network analysis of Aux/IAA gene family in Salvia miltiorrhiza
por: Huang, Bin, et al.
Publicado: (2023)

Identification of Important Modules and Biomarkers That Are Related to Immune Infiltration Cells in Severe Burns Based on Weighted Gene Co-Expression Network Analysis
por: Zhang, Zexin, et al.
Publicado: (2022)

Identification of Prognostic Genes in Leiomyosarcoma by Gene Co-Expression Network Analysis
por: Yang, Jun, et al.
Publicado: (2020)

Identification of immune signatures in Parkinson’s disease based on co-expression networks
por: Dong, Xiaolin, et al.
Publicado: (2023)

Identification and characterization of CircRNA-associated CeRNA networks in moso bamboo under nitrogen stress
por: Zhu, Chenglei, et al.
Publicado: (2023)

Network statistics of genetically-driven gene co-expression modules in mouse crosses
por: Scott-Boyer, Marie-Pier, et al.
Publicado: (2013)

Identification of Cancer Hallmarks Based on the Gene Co-expression Networks of Seven Cancers
por: Yu, Ling-Hao, et al.
Publicado: (2019)

Identification and Characterization of PRE Genes in Moso Bamboo (Phyllostachys edulis)
por: Zheng, Sujin, et al.
Publicado: (2023)

Developing genome-wide microsatellite markers of bamboo and their applications on molecular marker assisted taxonomy for accessions in the genus Phyllostachys
por: Zhao, Hansheng, et al.
Publicado: (2015)

Identification of susceptibility modules and hub genes of osteoarthritis by WGCNA analysis
por: Wang, Yanchao, et al.
Publicado: (2022)

KISL: knowledge-injected semi-supervised learning for biological co-expression network modules
por: Xiao, Gangyi, et al.
Publicado: (2023)

Identification of FCER1G related to Activated Memory CD4(+) T Cells Infiltration by Gene Co-expression Network and Construction of a Risk Prediction Module in Diffuse Large B-Cell Lymphoma
por: Xiang, Xiaoyu, et al.
Publicado: (2022)

Predicting the Disease Genes of Multiple Sclerosis Based on Network Representation Learning
por: Liu, Haijie, et al.
Publicado: (2020)

Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos
por: Wang, Jiongliang, et al.
Publicado: (2021)

Identification of Hub Genes and Potential ceRNA Networks of Diabetic Nephropathy by Weighted Gene Co-Expression Network Analysis
por: Li, Guoqing, et al.
Publicado: (2021)

AppleMDO: A Multi-Dimensional Omics Database for Apple Co-Expression Networks and Chromatin States
por: Da, Lingling, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_15kurf8p0m5rss7077fudfcqt9