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Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study

In this study, a methodology has been proposed to identify the origin of animal DNA, employing high throughput extension accessory Fourier transform infrared (HT-FTIR) spectroscopy coupled with chemometrics. Important discriminatory characteristics were identified in the FTIR spectral peaks of 51 st...

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Autores principales: Han, Yahong, Jian, Lin, Yao, Yumei, Wang, Xinlei, Han, Lujia, Liu, Xian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6278494/
https://www.ncbi.nlm.nih.gov/pubmed/30388819
http://dx.doi.org/10.3390/molecules23112842
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author Han, Yahong
Jian, Lin
Yao, Yumei
Wang, Xinlei
Han, Lujia
Liu, Xian
author_facet Han, Yahong
Jian, Lin
Yao, Yumei
Wang, Xinlei
Han, Lujia
Liu, Xian
author_sort Han, Yahong
collection PubMed
description In this study, a methodology has been proposed to identify the origin of animal DNA, employing high throughput extension accessory Fourier transform infrared (HT-FTIR) spectroscopy coupled with chemometrics. Important discriminatory characteristics were identified in the FTIR spectral peaks of 51 standard DNA samples (25 from bovine and 26 from fish origins), including 1710, 1659, 1608, 1531, 1404, 1375, 1248, 1091, 1060, and 966 cm(−1). In particular, the bands at 1708 and 1668 cm(−1) were higher in fish DNA than in bovine DNA, while the reverse was true for the band at 1530 cm(−1) was shown the opposite result. It was also found that the PO(2)(−) V(as)/V(s) ratio (1238/1094 cm(−1)) was significantly higher (p < 0.05) in bovine DNA than in fish DNA. These discriminatory characteristics were further revealed to be closely related to the base content and base sequences of different samples. Multivariate analyses, such as principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA) were conducted, and both the sensitivity and specificity values of PLS-DA model were one. This methodology has been further validated by 20 meat tissue samples (4 from bovine, 5 from ovine, 5 from porcine, and 6 from fish origins), and these were successfully differentiated. This case study demonstrated that FTIR spectroscopy coupled with PLS-DA discriminant model could provide a rapid, sensitive, and reliable approach for the identification of DNA of animal origin. This methodology could be widely applied in food, feed, forensic science, and archaeology studies.
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spelling pubmed-62784942018-12-13 Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study Han, Yahong Jian, Lin Yao, Yumei Wang, Xinlei Han, Lujia Liu, Xian Molecules Article In this study, a methodology has been proposed to identify the origin of animal DNA, employing high throughput extension accessory Fourier transform infrared (HT-FTIR) spectroscopy coupled with chemometrics. Important discriminatory characteristics were identified in the FTIR spectral peaks of 51 standard DNA samples (25 from bovine and 26 from fish origins), including 1710, 1659, 1608, 1531, 1404, 1375, 1248, 1091, 1060, and 966 cm(−1). In particular, the bands at 1708 and 1668 cm(−1) were higher in fish DNA than in bovine DNA, while the reverse was true for the band at 1530 cm(−1) was shown the opposite result. It was also found that the PO(2)(−) V(as)/V(s) ratio (1238/1094 cm(−1)) was significantly higher (p < 0.05) in bovine DNA than in fish DNA. These discriminatory characteristics were further revealed to be closely related to the base content and base sequences of different samples. Multivariate analyses, such as principal component analysis (PCA) and partial least squares-discriminant analysis (PLS-DA) were conducted, and both the sensitivity and specificity values of PLS-DA model were one. This methodology has been further validated by 20 meat tissue samples (4 from bovine, 5 from ovine, 5 from porcine, and 6 from fish origins), and these were successfully differentiated. This case study demonstrated that FTIR spectroscopy coupled with PLS-DA discriminant model could provide a rapid, sensitive, and reliable approach for the identification of DNA of animal origin. This methodology could be widely applied in food, feed, forensic science, and archaeology studies. MDPI 2018-11-01 /pmc/articles/PMC6278494/ /pubmed/30388819 http://dx.doi.org/10.3390/molecules23112842 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Han, Yahong
Jian, Lin
Yao, Yumei
Wang, Xinlei
Han, Lujia
Liu, Xian
Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title_full Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title_fullStr Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title_full_unstemmed Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title_short Insight into Rapid DNA-Specific Identification of Animal Origin Based on FTIR Analysis: A Case Study
title_sort insight into rapid dna-specific identification of animal origin based on ftir analysis: a case study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6278494/
https://www.ncbi.nlm.nih.gov/pubmed/30388819
http://dx.doi.org/10.3390/molecules23112842
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