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Increasing workflow development speed and reproducibility with Vectools
Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common eas...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281013/ https://www.ncbi.nlm.nih.gov/pubmed/30631441 http://dx.doi.org/10.12688/f1000research.16301.2 |
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author | Weirick, Tyler Müller, Raphael Uchida, Shizuka |
author_facet | Weirick, Tyler Müller, Raphael Uchida, Shizuka |
author_sort | Weirick, Tyler |
collection | PubMed |
description | Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions. |
format | Online Article Text |
id | pubmed-6281013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-62810132019-01-09 Increasing workflow development speed and reproducibility with Vectools Weirick, Tyler Müller, Raphael Uchida, Shizuka F1000Res Software Tool Article Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions. F1000 Research Limited 2018-10-23 /pmc/articles/PMC6281013/ /pubmed/30631441 http://dx.doi.org/10.12688/f1000research.16301.2 Text en Copyright: © 2018 Weirick T et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Weirick, Tyler Müller, Raphael Uchida, Shizuka Increasing workflow development speed and reproducibility with Vectools |
title | Increasing workflow development speed and reproducibility with Vectools |
title_full | Increasing workflow development speed and reproducibility with Vectools |
title_fullStr | Increasing workflow development speed and reproducibility with Vectools |
title_full_unstemmed | Increasing workflow development speed and reproducibility with Vectools |
title_short | Increasing workflow development speed and reproducibility with Vectools |
title_sort | increasing workflow development speed and reproducibility with vectools |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281013/ https://www.ncbi.nlm.nih.gov/pubmed/30631441 http://dx.doi.org/10.12688/f1000research.16301.2 |
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