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Increasing workflow development speed and reproducibility with Vectools

Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common eas...

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Detalles Bibliográficos
Autores principales: Weirick, Tyler, Müller, Raphael, Uchida, Shizuka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281013/
https://www.ncbi.nlm.nih.gov/pubmed/30631441
http://dx.doi.org/10.12688/f1000research.16301.2
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author Weirick, Tyler
Müller, Raphael
Uchida, Shizuka
author_facet Weirick, Tyler
Müller, Raphael
Uchida, Shizuka
author_sort Weirick, Tyler
collection PubMed
description Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions.
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spelling pubmed-62810132019-01-09 Increasing workflow development speed and reproducibility with Vectools Weirick, Tyler Müller, Raphael Uchida, Shizuka F1000Res Software Tool Article Despite advances in bioinformatics, custom scripts remain a source of difficulty, slowing workflow development and hampering reproducibility. Here, we introduce Vectools, a command-line tool-suite to reduce reliance on custom scripts and improve reproducibility by offering a wide range of common easy-to-use functions for table and vector manipulation. Vectools also offers a number of vector related functions to speed up workflow development, such as simple machine learning and common statistics functions. F1000 Research Limited 2018-10-23 /pmc/articles/PMC6281013/ /pubmed/30631441 http://dx.doi.org/10.12688/f1000research.16301.2 Text en Copyright: © 2018 Weirick T et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Weirick, Tyler
Müller, Raphael
Uchida, Shizuka
Increasing workflow development speed and reproducibility with Vectools
title Increasing workflow development speed and reproducibility with Vectools
title_full Increasing workflow development speed and reproducibility with Vectools
title_fullStr Increasing workflow development speed and reproducibility with Vectools
title_full_unstemmed Increasing workflow development speed and reproducibility with Vectools
title_short Increasing workflow development speed and reproducibility with Vectools
title_sort increasing workflow development speed and reproducibility with vectools
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281013/
https://www.ncbi.nlm.nih.gov/pubmed/30631441
http://dx.doi.org/10.12688/f1000research.16301.2
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