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Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings
Modeling spatially explicit data provides a powerful approach to identify the effects of exogenous features associated with biological processes, including recruitment of stream fishes. However, the complex spatial and temporal dynamics of the stream and the species’ reproductive and early life stag...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281228/ https://www.ncbi.nlm.nih.gov/pubmed/30517091 http://dx.doi.org/10.1371/journal.pone.0204150 |
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author | Finley, Andrew O. Forsythe, Patrick S. Crossman, James A. Baker, Edward A. Scribner, Kim T. |
author_facet | Finley, Andrew O. Forsythe, Patrick S. Crossman, James A. Baker, Edward A. Scribner, Kim T. |
author_sort | Finley, Andrew O. |
collection | PubMed |
description | Modeling spatially explicit data provides a powerful approach to identify the effects of exogenous features associated with biological processes, including recruitment of stream fishes. However, the complex spatial and temporal dynamics of the stream and the species’ reproductive and early life stage behaviors present challenges to drawing valid inference using traditional regression models. In these settings it is often difficult to ensure the spatial independence among model residuals—a key assumption that must be met to ensure valid inference. We present statistical models capable of capturing complex residual anisotropic patterns through the addition of spatial random effects within an inferential framework that acknowledges uncertainty in the data and parameters. Proposed models are used to explore the impact of environmental variables on Lake sturgeon (Acipenser fulvescens) reproduction, particularly questions about patterns in egg deposition. Our results demonstrate the need to apply valid statistical methods to identify relationships between response variables, e.g., egg counts, across locations, and environmental covariates in the presence of strong and anisotropic autocorrelation in stream systems. The models may be applied to other settings where gamete distribution or, more generally, other biotic phenomena may be associated with spatially dynamic and anisotropic processes. |
format | Online Article Text |
id | pubmed-6281228 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-62812282018-12-20 Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings Finley, Andrew O. Forsythe, Patrick S. Crossman, James A. Baker, Edward A. Scribner, Kim T. PLoS One Research Article Modeling spatially explicit data provides a powerful approach to identify the effects of exogenous features associated with biological processes, including recruitment of stream fishes. However, the complex spatial and temporal dynamics of the stream and the species’ reproductive and early life stage behaviors present challenges to drawing valid inference using traditional regression models. In these settings it is often difficult to ensure the spatial independence among model residuals—a key assumption that must be met to ensure valid inference. We present statistical models capable of capturing complex residual anisotropic patterns through the addition of spatial random effects within an inferential framework that acknowledges uncertainty in the data and parameters. Proposed models are used to explore the impact of environmental variables on Lake sturgeon (Acipenser fulvescens) reproduction, particularly questions about patterns in egg deposition. Our results demonstrate the need to apply valid statistical methods to identify relationships between response variables, e.g., egg counts, across locations, and environmental covariates in the presence of strong and anisotropic autocorrelation in stream systems. The models may be applied to other settings where gamete distribution or, more generally, other biotic phenomena may be associated with spatially dynamic and anisotropic processes. Public Library of Science 2018-12-05 /pmc/articles/PMC6281228/ /pubmed/30517091 http://dx.doi.org/10.1371/journal.pone.0204150 Text en © 2018 Finley et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Finley, Andrew O. Forsythe, Patrick S. Crossman, James A. Baker, Edward A. Scribner, Kim T. Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title | Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title_full | Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title_fullStr | Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title_full_unstemmed | Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title_short | Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: A lake sturgeon case study in natural stream settings |
title_sort | assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: a lake sturgeon case study in natural stream settings |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281228/ https://www.ncbi.nlm.nih.gov/pubmed/30517091 http://dx.doi.org/10.1371/journal.pone.0204150 |
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