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Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments

The performance of three machine learning methods (support vector regression, random forests and artificial neural network) for estimating the LAI of paddy rice was evaluated in this study. Traditional univariate regression models involving narrowband NDVI with optimized band combinations as well as...

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Detalles Bibliográficos
Autores principales: Wang, Li, Chang, Qingrui, Yang, Jing, Zhang, Xiaohua, Li, Fenling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281281/
https://www.ncbi.nlm.nih.gov/pubmed/30517144
http://dx.doi.org/10.1371/journal.pone.0207624
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author Wang, Li
Chang, Qingrui
Yang, Jing
Zhang, Xiaohua
Li, Fenling
author_facet Wang, Li
Chang, Qingrui
Yang, Jing
Zhang, Xiaohua
Li, Fenling
author_sort Wang, Li
collection PubMed
description The performance of three machine learning methods (support vector regression, random forests and artificial neural network) for estimating the LAI of paddy rice was evaluated in this study. Traditional univariate regression models involving narrowband NDVI with optimized band combinations as well as linear multivariate calibration partial least squares regression models were also evaluated for comparison. A four year field-collected dataset was used to test the robustness of LAI estimation models against temporal variation. The partial least squares regression and three machine learning methods were built on the raw hyperspectral reflectance and the first derivative separately. Two different rules were used to determine the models’ key parameters. The results showed that the combination of the red edge and NIR bands (766 nm and 830 nm) as well as the combination of SWIR bands (1114 nm and 1190 nm) were optimal for producing the narrowband NDVI. The models built on the first derivative spectra yielded more accurate results than the corresponding models built on the raw spectra. Properly selected model parameters resulted in comparable accuracy and robustness with the empirical optimal parameter and significantly reduced the model complexity. The machine learning methods were more accurate and robust than the VI methods and partial least squares regression. When validating the calibrated models against the standalone validation dataset, the VI method yielded a validation RMSE value of 1.17 for NDVI((766,830)) and 1.01 for NDVI((1114,1190)), while the best models for the partial least squares, support vector machine and artificial neural network methods yielded validation RMSE values of 0.84, 0.82, 0.67 and 0.84, respectively. The RF models built on the first derivative spectra with mtry = 10 showed the highest potential for estimating the LAI of paddy rice.
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spelling pubmed-62812812018-12-20 Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments Wang, Li Chang, Qingrui Yang, Jing Zhang, Xiaohua Li, Fenling PLoS One Research Article The performance of three machine learning methods (support vector regression, random forests and artificial neural network) for estimating the LAI of paddy rice was evaluated in this study. Traditional univariate regression models involving narrowband NDVI with optimized band combinations as well as linear multivariate calibration partial least squares regression models were also evaluated for comparison. A four year field-collected dataset was used to test the robustness of LAI estimation models against temporal variation. The partial least squares regression and three machine learning methods were built on the raw hyperspectral reflectance and the first derivative separately. Two different rules were used to determine the models’ key parameters. The results showed that the combination of the red edge and NIR bands (766 nm and 830 nm) as well as the combination of SWIR bands (1114 nm and 1190 nm) were optimal for producing the narrowband NDVI. The models built on the first derivative spectra yielded more accurate results than the corresponding models built on the raw spectra. Properly selected model parameters resulted in comparable accuracy and robustness with the empirical optimal parameter and significantly reduced the model complexity. The machine learning methods were more accurate and robust than the VI methods and partial least squares regression. When validating the calibrated models against the standalone validation dataset, the VI method yielded a validation RMSE value of 1.17 for NDVI((766,830)) and 1.01 for NDVI((1114,1190)), while the best models for the partial least squares, support vector machine and artificial neural network methods yielded validation RMSE values of 0.84, 0.82, 0.67 and 0.84, respectively. The RF models built on the first derivative spectra with mtry = 10 showed the highest potential for estimating the LAI of paddy rice. Public Library of Science 2018-12-05 /pmc/articles/PMC6281281/ /pubmed/30517144 http://dx.doi.org/10.1371/journal.pone.0207624 Text en © 2018 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wang, Li
Chang, Qingrui
Yang, Jing
Zhang, Xiaohua
Li, Fenling
Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title_full Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title_fullStr Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title_full_unstemmed Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title_short Estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
title_sort estimation of paddy rice leaf area index using machine learning methods based on hyperspectral data from multi-year experiments
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281281/
https://www.ncbi.nlm.nih.gov/pubmed/30517144
http://dx.doi.org/10.1371/journal.pone.0207624
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