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No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor

OBJECTIVE: To assess the contribution of variants in STK32B, PPARGC1A, and CTNNA3 as essential tremor (ET) predisposing factors following their association in a 2-stage genome-wide association study (GWAS). METHODS: The coding regions of these genes was examined for the presence of rare variants usi...

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Autores principales: Houle, Gabrielle, Ambalavanan, Amirthagowri, Schmouth, Jean-François, Leblond, Claire S., Spiegelman, Dan, Laurent, Sandra B., Bourassa, Cynthia V., Grayson, Celene, Panisset, Michel, Chouinard, Sylvain, Dupré, Nicolas, Vilariño-Güell, Carles, Rajput, Alex, Girard, Simon L., Dion, Patrick A., Rouleau, Guy A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281551/
https://www.ncbi.nlm.nih.gov/pubmed/30584593
http://dx.doi.org/10.1212/NXG.0000000000000195
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author Houle, Gabrielle
Ambalavanan, Amirthagowri
Schmouth, Jean-François
Leblond, Claire S.
Spiegelman, Dan
Laurent, Sandra B.
Bourassa, Cynthia V.
Grayson, Celene
Panisset, Michel
Chouinard, Sylvain
Dupré, Nicolas
Vilariño-Güell, Carles
Rajput, Alex
Girard, Simon L.
Dion, Patrick A.
Rouleau, Guy A.
author_facet Houle, Gabrielle
Ambalavanan, Amirthagowri
Schmouth, Jean-François
Leblond, Claire S.
Spiegelman, Dan
Laurent, Sandra B.
Bourassa, Cynthia V.
Grayson, Celene
Panisset, Michel
Chouinard, Sylvain
Dupré, Nicolas
Vilariño-Güell, Carles
Rajput, Alex
Girard, Simon L.
Dion, Patrick A.
Rouleau, Guy A.
author_sort Houle, Gabrielle
collection PubMed
description OBJECTIVE: To assess the contribution of variants in STK32B, PPARGC1A, and CTNNA3 as essential tremor (ET) predisposing factors following their association in a 2-stage genome-wide association study (GWAS). METHODS: The coding regions of these genes was examined for the presence of rare variants using two approaches: (1) Looking at whole-exome and whole-genome sequencing data of 14 autosomal dominant multiplex ET families. (2) Conducting a targeted massive parallel sequencing to examine the three genes in cohorts of 269 ET cases and 287 control individuals. The cumulative impact of rare variants was assessed using SKAT-O analyses using (1) all variants, (2) only rare variants, and (3) only the rare variants altering the mRNA. RESULTS: Thirty-four variants were identified. No difference emerged regarding the distributions of individual variants (or gene) between cases and controls. CONCLUSION: No rare exonic variants further validated one of these genes as a risk factor for ET. The recent GWAS offers promising avenues, but the genetic heterogeneity of ET is nonetheless challenging for the validation of risk factors, and ultimately larger cohorts of cases should help to overcome this task.
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spelling pubmed-62815512018-12-24 No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor Houle, Gabrielle Ambalavanan, Amirthagowri Schmouth, Jean-François Leblond, Claire S. Spiegelman, Dan Laurent, Sandra B. Bourassa, Cynthia V. Grayson, Celene Panisset, Michel Chouinard, Sylvain Dupré, Nicolas Vilariño-Güell, Carles Rajput, Alex Girard, Simon L. Dion, Patrick A. Rouleau, Guy A. Neurol Genet Article OBJECTIVE: To assess the contribution of variants in STK32B, PPARGC1A, and CTNNA3 as essential tremor (ET) predisposing factors following their association in a 2-stage genome-wide association study (GWAS). METHODS: The coding regions of these genes was examined for the presence of rare variants using two approaches: (1) Looking at whole-exome and whole-genome sequencing data of 14 autosomal dominant multiplex ET families. (2) Conducting a targeted massive parallel sequencing to examine the three genes in cohorts of 269 ET cases and 287 control individuals. The cumulative impact of rare variants was assessed using SKAT-O analyses using (1) all variants, (2) only rare variants, and (3) only the rare variants altering the mRNA. RESULTS: Thirty-four variants were identified. No difference emerged regarding the distributions of individual variants (or gene) between cases and controls. CONCLUSION: No rare exonic variants further validated one of these genes as a risk factor for ET. The recent GWAS offers promising avenues, but the genetic heterogeneity of ET is nonetheless challenging for the validation of risk factors, and ultimately larger cohorts of cases should help to overcome this task. Wolters Kluwer 2017-10-19 /pmc/articles/PMC6281551/ /pubmed/30584593 http://dx.doi.org/10.1212/NXG.0000000000000195 Text en Copyright © 2017 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (http://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits downloading and sharing the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.
spellingShingle Article
Houle, Gabrielle
Ambalavanan, Amirthagowri
Schmouth, Jean-François
Leblond, Claire S.
Spiegelman, Dan
Laurent, Sandra B.
Bourassa, Cynthia V.
Grayson, Celene
Panisset, Michel
Chouinard, Sylvain
Dupré, Nicolas
Vilariño-Güell, Carles
Rajput, Alex
Girard, Simon L.
Dion, Patrick A.
Rouleau, Guy A.
No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title_full No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title_fullStr No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title_full_unstemmed No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title_short No rare deleterious variants from STK32B, PPARGC1A, and CTNNA3 are associated with essential tremor
title_sort no rare deleterious variants from stk32b, ppargc1a, and ctnna3 are associated with essential tremor
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6281551/
https://www.ncbi.nlm.nih.gov/pubmed/30584593
http://dx.doi.org/10.1212/NXG.0000000000000195
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