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Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories

PURPOSE: Design of a preconditioner for fast and efficient parallel imaging (PI) and compressed sensing (CS) reconstructions for Cartesian trajectories. THEORY: PI and CS reconstructions become time consuming when the problem size or the number of coils is large, due to the large linear system of eq...

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Autores principales: Koolstra, Kirsten, van Gemert, Jeroen, Börnert, Peter, Webb, Andrew, Remis, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283050/
https://www.ncbi.nlm.nih.gov/pubmed/30084505
http://dx.doi.org/10.1002/mrm.27371
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author Koolstra, Kirsten
van Gemert, Jeroen
Börnert, Peter
Webb, Andrew
Remis, Rob
author_facet Koolstra, Kirsten
van Gemert, Jeroen
Börnert, Peter
Webb, Andrew
Remis, Rob
author_sort Koolstra, Kirsten
collection PubMed
description PURPOSE: Design of a preconditioner for fast and efficient parallel imaging (PI) and compressed sensing (CS) reconstructions for Cartesian trajectories. THEORY: PI and CS reconstructions become time consuming when the problem size or the number of coils is large, due to the large linear system of equations that has to be solved in [Formula: see text] and [Formula: see text] ‐norm based reconstruction algorithms. Such linear systems can be solved efficiently using effective preconditioning techniques. METHODS: In this article we construct such a preconditioner by approximating the system matrix of the linear system, which comprises the data fidelity and includes total variation and wavelet regularization, by a matrix that is block circulant with circulant blocks. Due to this structure, the preconditioner can be constructed quickly and its inverse can be evaluated fast using only two fast Fourier transformations. We test the performance of the preconditioner for the conjugate gradient method as the linear solver, integrated into the well‐established Split Bregman algorithm. RESULTS: The designed circulant preconditioner reduces the number of iterations required in the conjugate gradient method by almost a factor of 5. The speed up results in a total acceleration factor of approximately 2.5 for the entire reconstruction algorithm when implemented in MATLAB, while the initialization time of the preconditioner is negligible. CONCLUSION: The proposed preconditioner reduces the reconstruction time for PI and CS in a Split Bregman implementation without compromising reconstruction stability and can easily handle large systems since it is Fourier‐based, allowing for efficient computations.
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spelling pubmed-62830502018-12-14 Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories Koolstra, Kirsten van Gemert, Jeroen Börnert, Peter Webb, Andrew Remis, Rob Magn Reson Med Full Papers—Computer Processing and Modeling PURPOSE: Design of a preconditioner for fast and efficient parallel imaging (PI) and compressed sensing (CS) reconstructions for Cartesian trajectories. THEORY: PI and CS reconstructions become time consuming when the problem size or the number of coils is large, due to the large linear system of equations that has to be solved in [Formula: see text] and [Formula: see text] ‐norm based reconstruction algorithms. Such linear systems can be solved efficiently using effective preconditioning techniques. METHODS: In this article we construct such a preconditioner by approximating the system matrix of the linear system, which comprises the data fidelity and includes total variation and wavelet regularization, by a matrix that is block circulant with circulant blocks. Due to this structure, the preconditioner can be constructed quickly and its inverse can be evaluated fast using only two fast Fourier transformations. We test the performance of the preconditioner for the conjugate gradient method as the linear solver, integrated into the well‐established Split Bregman algorithm. RESULTS: The designed circulant preconditioner reduces the number of iterations required in the conjugate gradient method by almost a factor of 5. The speed up results in a total acceleration factor of approximately 2.5 for the entire reconstruction algorithm when implemented in MATLAB, while the initialization time of the preconditioner is negligible. CONCLUSION: The proposed preconditioner reduces the reconstruction time for PI and CS in a Split Bregman implementation without compromising reconstruction stability and can easily handle large systems since it is Fourier‐based, allowing for efficient computations. John Wiley and Sons Inc. 2018-08-07 2019-01 /pmc/articles/PMC6283050/ /pubmed/30084505 http://dx.doi.org/10.1002/mrm.27371 Text en © 2018 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Full Papers—Computer Processing and Modeling
Koolstra, Kirsten
van Gemert, Jeroen
Börnert, Peter
Webb, Andrew
Remis, Rob
Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title_full Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title_fullStr Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title_full_unstemmed Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title_short Accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
title_sort accelerating compressed sensing in parallel imaging reconstructions using an efficient circulant preconditioner for cartesian trajectories
topic Full Papers—Computer Processing and Modeling
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283050/
https://www.ncbi.nlm.nih.gov/pubmed/30084505
http://dx.doi.org/10.1002/mrm.27371
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