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Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels
[Image: see text] The ability of histidine to participate in a wide range of stabilizing polar interactions preferentially populates this residue in functionally important sites of proteins. Histidine possesses an amphiphilic and electrostatic nature that is essential for amino acids residing at mem...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284319/ https://www.ncbi.nlm.nih.gov/pubmed/30284812 http://dx.doi.org/10.1021/acs.biochem.8b00805 |
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author | Iyer, Bharat Ramasubramanian Vetal, Pallavi Vijay Noordeen, Henna Zadafiya, Punit Mahalakshmi, Radhakrishnan |
author_facet | Iyer, Bharat Ramasubramanian Vetal, Pallavi Vijay Noordeen, Henna Zadafiya, Punit Mahalakshmi, Radhakrishnan |
author_sort | Iyer, Bharat Ramasubramanian |
collection | PubMed |
description | [Image: see text] The ability of histidine to participate in a wide range of stabilizing polar interactions preferentially populates this residue in functionally important sites of proteins. Histidine possesses an amphiphilic and electrostatic nature that is essential for amino acids residing at membrane interfaces. However, the frequency of occurrence of histidine at membrane interfaces, particularly transmembrane β-barrels, is lower than those of other aromatic residues. Here, we carry out comprehensive energetic measurements using equilibrium folding of the outer membrane enzyme PagP to address the contribution of a C-terminal interface histidine to barrel stability. We show that placing histidine at the C-terminus universally destabilizes PagP by 4.0–8.0 kcal mol(–1) irrespective of the neighboring residue. Spectroscopic and electrophoretic measurements indicate that the altered stability may arise from a loss of barrel compaction. Isoleucine, methionine, and valine salvage this destabilization marginally (in addition to tyrosine, which shows an exceptionally high folding free energy value), when placed at the penultimate position, at the expense of an altered folding pathway. Double-mutant cycle analysis indicates that the coupling energy between the terminal and penultimate residues in PagP-X(160)H(161) increases when the level of intrinsic destabilization by the terminal H(161) is high. Our observations that neighboring residues cannot salvage the energetic destabilization of histidine may explain why histidine is less abundant at membrane interfaces. |
format | Online Article Text |
id | pubmed-6284319 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-62843192018-12-11 Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels Iyer, Bharat Ramasubramanian Vetal, Pallavi Vijay Noordeen, Henna Zadafiya, Punit Mahalakshmi, Radhakrishnan Biochemistry [Image: see text] The ability of histidine to participate in a wide range of stabilizing polar interactions preferentially populates this residue in functionally important sites of proteins. Histidine possesses an amphiphilic and electrostatic nature that is essential for amino acids residing at membrane interfaces. However, the frequency of occurrence of histidine at membrane interfaces, particularly transmembrane β-barrels, is lower than those of other aromatic residues. Here, we carry out comprehensive energetic measurements using equilibrium folding of the outer membrane enzyme PagP to address the contribution of a C-terminal interface histidine to barrel stability. We show that placing histidine at the C-terminus universally destabilizes PagP by 4.0–8.0 kcal mol(–1) irrespective of the neighboring residue. Spectroscopic and electrophoretic measurements indicate that the altered stability may arise from a loss of barrel compaction. Isoleucine, methionine, and valine salvage this destabilization marginally (in addition to tyrosine, which shows an exceptionally high folding free energy value), when placed at the penultimate position, at the expense of an altered folding pathway. Double-mutant cycle analysis indicates that the coupling energy between the terminal and penultimate residues in PagP-X(160)H(161) increases when the level of intrinsic destabilization by the terminal H(161) is high. Our observations that neighboring residues cannot salvage the energetic destabilization of histidine may explain why histidine is less abundant at membrane interfaces. American Chemical Society 2018-10-04 2018-12-04 /pmc/articles/PMC6284319/ /pubmed/30284812 http://dx.doi.org/10.1021/acs.biochem.8b00805 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Iyer, Bharat Ramasubramanian Vetal, Pallavi Vijay Noordeen, Henna Zadafiya, Punit Mahalakshmi, Radhakrishnan Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title | Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title_full | Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title_fullStr | Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title_full_unstemmed | Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title_short | Salvaging the Thermodynamic Destabilization of Interface Histidine in Transmembrane β-Barrels |
title_sort | salvaging the thermodynamic destabilization of interface histidine in transmembrane β-barrels |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284319/ https://www.ncbi.nlm.nih.gov/pubmed/30284812 http://dx.doi.org/10.1021/acs.biochem.8b00805 |
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