Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia

Here, we present an updated genome assembly of the diploid chytrid fungus Batrachochytrium dendrobatidis strain RTP6. This strain is part of the global panzootic lineage (BdGPL) and was isolated in Dunedin, New Zealand. The assembly was generated using PacBio long-read and Illumina short-read data,...

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Autores principales: Sumpter, Nicholas, Butler, Margi, Poulter, Russell
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284735/
https://www.ncbi.nlm.nih.gov/pubmed/30533847
http://dx.doi.org/10.1128/MRA.01348-18
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author Sumpter, Nicholas
Butler, Margi
Poulter, Russell
author_facet Sumpter, Nicholas
Butler, Margi
Poulter, Russell
author_sort Sumpter, Nicholas
collection PubMed
description Here, we present an updated genome assembly of the diploid chytrid fungus Batrachochytrium dendrobatidis strain RTP6. This strain is part of the global panzootic lineage (BdGPL) and was isolated in Dunedin, New Zealand. The assembly was generated using PacBio long-read and Illumina short-read data, allowing for the accurate phasing of heterozygosities.
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spelling pubmed-62847352018-12-07 Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia Sumpter, Nicholas Butler, Margi Poulter, Russell Microbiol Resour Announc Genome Sequences Here, we present an updated genome assembly of the diploid chytrid fungus Batrachochytrium dendrobatidis strain RTP6. This strain is part of the global panzootic lineage (BdGPL) and was isolated in Dunedin, New Zealand. The assembly was generated using PacBio long-read and Illumina short-read data, allowing for the accurate phasing of heterozygosities. American Society for Microbiology 2018-11-29 /pmc/articles/PMC6284735/ /pubmed/30533847 http://dx.doi.org/10.1128/MRA.01348-18 Text en Copyright © 2018 Sumpter et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Sumpter, Nicholas
Butler, Margi
Poulter, Russell
Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title_full Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title_fullStr Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title_full_unstemmed Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title_short Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia
title_sort single-phase pacbio de novo assembly of the genome of the chytrid fungus batrachochytrium dendrobatidis, a pathogen of amphibia
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6284735/
https://www.ncbi.nlm.nih.gov/pubmed/30533847
http://dx.doi.org/10.1128/MRA.01348-18
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