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Building a local community of practice in scientific programming for life scientists

In this paper, we describe why and how to build a local community of practice in scientific programming for life scientists who use computers and programming in their research. A community of practice is a small group of scientists who meet regularly to help each other and promote good practices in...

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Autores principales: Stevens, Sarah L. R., Kuzak, Mateusz, Martinez, Carlos, Moser, Aurelia, Bleeker, Petra, Galland, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6287879/
https://www.ncbi.nlm.nih.gov/pubmed/30485260
http://dx.doi.org/10.1371/journal.pbio.2005561
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author Stevens, Sarah L. R.
Kuzak, Mateusz
Martinez, Carlos
Moser, Aurelia
Bleeker, Petra
Galland, Marc
author_facet Stevens, Sarah L. R.
Kuzak, Mateusz
Martinez, Carlos
Moser, Aurelia
Bleeker, Petra
Galland, Marc
author_sort Stevens, Sarah L. R.
collection PubMed
description In this paper, we describe why and how to build a local community of practice in scientific programming for life scientists who use computers and programming in their research. A community of practice is a small group of scientists who meet regularly to help each other and promote good practices in scientific programming. While most life scientists are well trained in the laboratory to conduct experiments, good practices with (big) data sets and their analysis are often missing. We propose a model on how to build such a community of practice at a local academic institution, present two real-life examples, and introduce challenges and implemented solutions. We believe that the current data deluge that life scientists face can benefit from the implementation of these small communities. Good practices spread among experimental scientists will foster open, transparent, and sound scientific results beneficial to society.
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spelling pubmed-62878792018-12-28 Building a local community of practice in scientific programming for life scientists Stevens, Sarah L. R. Kuzak, Mateusz Martinez, Carlos Moser, Aurelia Bleeker, Petra Galland, Marc PLoS Biol Community Page In this paper, we describe why and how to build a local community of practice in scientific programming for life scientists who use computers and programming in their research. A community of practice is a small group of scientists who meet regularly to help each other and promote good practices in scientific programming. While most life scientists are well trained in the laboratory to conduct experiments, good practices with (big) data sets and their analysis are often missing. We propose a model on how to build such a community of practice at a local academic institution, present two real-life examples, and introduce challenges and implemented solutions. We believe that the current data deluge that life scientists face can benefit from the implementation of these small communities. Good practices spread among experimental scientists will foster open, transparent, and sound scientific results beneficial to society. Public Library of Science 2018-11-28 /pmc/articles/PMC6287879/ /pubmed/30485260 http://dx.doi.org/10.1371/journal.pbio.2005561 Text en © 2018 Stevens et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Community Page
Stevens, Sarah L. R.
Kuzak, Mateusz
Martinez, Carlos
Moser, Aurelia
Bleeker, Petra
Galland, Marc
Building a local community of practice in scientific programming for life scientists
title Building a local community of practice in scientific programming for life scientists
title_full Building a local community of practice in scientific programming for life scientists
title_fullStr Building a local community of practice in scientific programming for life scientists
title_full_unstemmed Building a local community of practice in scientific programming for life scientists
title_short Building a local community of practice in scientific programming for life scientists
title_sort building a local community of practice in scientific programming for life scientists
topic Community Page
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6287879/
https://www.ncbi.nlm.nih.gov/pubmed/30485260
http://dx.doi.org/10.1371/journal.pbio.2005561
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