Cargando…
Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic
Here we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization reve...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288392/ https://www.ncbi.nlm.nih.gov/pubmed/30761330 http://dx.doi.org/10.1016/j.dib.2018.11.107 |
_version_ | 1783379784990982144 |
---|---|
author | Pudova, Daria S. Lutfullin, Marat T. Shagimardanova, Elena I. Hadieva, Guzel F. Shigapova, Leyla Toymentseva, Anna A. Kabanov, Daniil A. Mardanova, Ayslu M. Vologin, Semen G. Sharipova, Margarita R. |
author_facet | Pudova, Daria S. Lutfullin, Marat T. Shagimardanova, Elena I. Hadieva, Guzel F. Shigapova, Leyla Toymentseva, Anna A. Kabanov, Daniil A. Mardanova, Ayslu M. Vologin, Semen G. Sharipova, Margarita R. |
author_sort | Pudova, Daria S. |
collection | PubMed |
description | Here we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization revealed that the strain belongs to the species Lysinibacillus fusiformis. The 4,678,122 bp draft genome consist of 17 scaffolds encoding 4588 proteins and 137 RNAs. Annotation of the genome sequence revealed cellulase and protease encoding genes, genes of adhesion proteins and putative genes responsible for the biosynthesis of antimicrobial metabolites. The Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number NTMQ00000000.1 (https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1). |
format | Online Article Text |
id | pubmed-6288392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-62883922019-02-13 Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic Pudova, Daria S. Lutfullin, Marat T. Shagimardanova, Elena I. Hadieva, Guzel F. Shigapova, Leyla Toymentseva, Anna A. Kabanov, Daniil A. Mardanova, Ayslu M. Vologin, Semen G. Sharipova, Margarita R. Data Brief Genetics, Genomics and Molecular Biology Here we present the morphological and physiological properties of isolated Lysinibacillus fusiformis strain GM, its draft genome sequence as well as annotation and analysis of its genome. Initial analysis of MALDI-TOF mass spectrometry, 16S rRNA gene analysis and in silico DNA-DNA hybridization revealed that the strain belongs to the species Lysinibacillus fusiformis. The 4,678,122 bp draft genome consist of 17 scaffolds encoding 4588 proteins and 137 RNAs. Annotation of the genome sequence revealed cellulase and protease encoding genes, genes of adhesion proteins and putative genes responsible for the biosynthesis of antimicrobial metabolites. The Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession number NTMQ00000000.1 (https://www.ncbi.nlm.nih.gov/nuccore/NZ_NTMQ00000000.1). Elsevier 2018-11-24 /pmc/articles/PMC6288392/ /pubmed/30761330 http://dx.doi.org/10.1016/j.dib.2018.11.107 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Pudova, Daria S. Lutfullin, Marat T. Shagimardanova, Elena I. Hadieva, Guzel F. Shigapova, Leyla Toymentseva, Anna A. Kabanov, Daniil A. Mardanova, Ayslu M. Vologin, Semen G. Sharipova, Margarita R. Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title_full | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title_fullStr | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title_full_unstemmed | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title_short | Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic |
title_sort | draft genome sequence data of lysinibacillus fusiformis strain gm, isolated from potato phyllosphere as a potential probiotic |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288392/ https://www.ncbi.nlm.nih.gov/pubmed/30761330 http://dx.doi.org/10.1016/j.dib.2018.11.107 |
work_keys_str_mv | AT pudovadarias draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT lutfullinmaratt draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT shagimardanovaelenai draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT hadievaguzelf draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT shigapovaleyla draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT toymentsevaannaa draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT kabanovdaniila draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT mardanovaayslum draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT vologinsemeng draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic AT sharipovamargaritar draftgenomesequencedataoflysinibacillusfusiformisstraingmisolatedfrompotatophyllosphereasapotentialprobiotic |