Cargando…
BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data
BACKGROUND: Bisulfite sequencing is one of the major high-resolution DNA methylation measurement method. Due to the selective nucleotide conversion on unmethylated cytosines after treatment with sodium bisulfite, processing bisulfite-treated sequencing reads requires additional steps which need high...
Autores principales: | Soe, Seokjun, Park, Yoonjae, Chae, Heejoon |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288881/ https://www.ncbi.nlm.nih.gov/pubmed/30526492 http://dx.doi.org/10.1186/s12859-018-2498-2 |
Ejemplares similares
-
pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP
por: Chen, Weiya, et al.
Publicado: (2020) -
SparkBLAST: scalable BLAST processing using in-memory operations
por: de Castro, Marcelo Rodrigo, et al.
Publicado: (2017) -
IMOS: improved Meta-aligner and Minimap2 On Spark
por: Hadadian Nejad Yousefi, Mostafa, et al.
Publicado: (2019) -
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark
por: Linderman, Michael D., et al.
Publicado: (2019) -
ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark
por: Xiao, Anghong, et al.
Publicado: (2019)