Cargando…

Exploring the influence from whole blood DNA extraction methods on Infinium 450K DNA methylation

Genome-wide DNA methylation studies are becoming increasingly important in unraveling the epigenetic basis of cell biology, aging and human conditions. The aim of the present study was to explore whether different methods for extracting DNA from whole blood can affect DNA methylation outcome, potent...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hjorthaug, Hanne Sagsveen, Gervin, Kristina, Mowinckel, Petter, Munthe-Kaas, Monica Cheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6291135/ https://www.ncbi.nlm.nih.gov/pubmed/30540848 http://dx.doi.org/10.1371/journal.pone.0208699

Ejemplares similares

Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood
por: Gervin, Kristina, et al.
Publicado: (2016)

Modeling dependency structures in 450k DNA methylation data
por: Nustad, Haakon E, et al.
Publicado: (2021)

Infinium Monkeys: Infinium 450K Array for the Cynomolgus macaque (Macaca fascicularis)
por: Ong, Mei-Lyn, et al.
Publicado: (2014)

Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
por: Morris, Tiffany J., et al.
Publicado: (2015)

Epigenome-Wide DNA Methylation Profiling in Colorectal Cancer and Normal Adjacent Colon Using Infinium Human Methylation 450K
por: Baharudin, Rashidah, et al.
Publicado: (2022)

The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
por: Joo, JiHoon E, et al.
Publicado: (2013)

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
por: Wang, Zhenxing, et al.
Publicado: (2018)

Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage
por: Cheung, Kathleen, et al.
Publicado: (2019)

Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures
por: Olstad, Emilie Willoch, et al.
Publicado: (2022)

Using Illumina Infinium HumanMethylation 450K BeadChip to explore genome-wide DNA methylation profiles in a human hepatocellular carcinoma cell line
por: Sun, Ning, et al.
Publicado: (2018)

FastDMA: An Infinium HumanMethylation450 Beadchip Analyzer
por: Wu, Dingming, et al.
Publicado: (2013)

Marmal-aid – a database for Infinium HumanMethylation450
por: Lowe, Robert, et al.
Publicado: (2013)

Validation of DNA methylation profiling in formalin-fixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray
por: Moran, Sebastián, et al.
Publicado: (2014)

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
por: Teschendorff, Andrew E., et al.
Publicado: (2013)

Novel region discovery method for Infinium 450K DNA methylation data reveals changes associated with aging in muscle and neuronal pathways
por: Ong, Mei-Lyn, et al.
Publicado: (2014)

A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
por: Wang, Ting, et al.
Publicado: (2015)

Identification of DNA methylation biomarkers from Infinium arrays
por: Wessely, Frank, et al.
Publicado: (2012)

A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data
por: Bacalini, Maria Giulia, et al.
Publicado: (2015)

Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples
por: Teh, Ai Ling, et al.
Publicado: (2016)

A comprehensive overview of Infinium HumanMethylation450 data processing
por: Dedeurwaerder, Sarah, et al.
Publicado: (2014)

Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison
por: De Meyer, Tim, et al.
Publicado: (2015)

Erratum: A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data
por: Bacalini, Maria Giulia, et al.
Publicado: (2016)

DNA Methylome Profiling on the Infinium HumanMethylation450 Array from Limiting Quantities of Genomic DNA from a Single, Small Archived Bloodspot
por: Asrani, Kripa, et al.
Publicado: (2017)

Low-level processing of Illumina Infinium DNA Methylation BeadArrays
por: Triche, Timothy J., et al.
Publicado: (2013)

A revision of the InfiniumPurify R package for genome-wide correction of tumor purity in Infinium DNA methylation array data
por: Hoang, Phuc H.
Publicado: (2022)

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus
por: Maden, Sean K, et al.
Publicado: (2021)

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies
por: Needhamsen, Maria, et al.
Publicado: (2017)

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay
por: Preussner, Jens, et al.
Publicado: (2015)

The impact of low input DNA on the reliability of DNA methylation as measured by the Illumina Infinium MethylationEPIC BeadChip
por: Watkins, Sarah Holmes, et al.
Publicado: (2022)

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
por: Gallego-Fabrega, Cristina, et al.
Publicado: (2015)

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes
por: Zhou, Wanding, et al.
Publicado: (2017)

Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts
por: Christiansen, Steffan Noe, et al.
Publicado: (2022)

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
por: Maksimovic, Jovana, et al.
Publicado: (2012)

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
por: Chen, Yi-an, et al.
Publicado: (2013)

Measuring the methylome in clinical samples: Improved processing of the Infinium Human Methylation450 BeadChip Array
por: Pan, Hong, et al.
Publicado: (2012)

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip(®) for Methylome Profiling
por: Clark, Christine, et al.
Publicado: (2012)

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions
por: Zhou, Wanding, et al.
Publicado: (2018)

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies
por: Daca-Roszak, Patrycja, et al.
Publicado: (2015)

Profiling DNA methylation differences between inbred mouse strains on the Illumina Human Infinium MethylationEPIC microarray
por: Gujar, Hemant, et al.
Publicado: (2018)

Comparison of global DNA methylation analysis by whole genome bisulfite sequencing and the Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis
por: Meyer, Olivia Strunge, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ono0g1ikegl8krnkheb7a06bav