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Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292960/ https://www.ncbi.nlm.nih.gov/pubmed/30581379 http://dx.doi.org/10.3389/fncel.2018.00481 |
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author | Jouty, Jonathan Hilgen, Gerrit Sernagor, Evelyne Hennig, Matthias H. |
author_facet | Jouty, Jonathan Hilgen, Gerrit Sernagor, Evelyne Hennig, Matthias H. |
author_sort | Jouty, Jonathan |
collection | PubMed |
description | Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities. |
format | Online Article Text |
id | pubmed-6292960 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-62929602018-12-21 Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina Jouty, Jonathan Hilgen, Gerrit Sernagor, Evelyne Hennig, Matthias H. Front Cell Neurosci Neuroscience Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities. Frontiers Media S.A. 2018-12-07 /pmc/articles/PMC6292960/ /pubmed/30581379 http://dx.doi.org/10.3389/fncel.2018.00481 Text en Copyright © 2018 Jouty, Hilgen, Sernagor and Hennig. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Jouty, Jonathan Hilgen, Gerrit Sernagor, Evelyne Hennig, Matthias H. Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title | Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title_full | Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title_fullStr | Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title_full_unstemmed | Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title_short | Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina |
title_sort | non-parametric physiological classification of retinal ganglion cells in the mouse retina |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292960/ https://www.ncbi.nlm.nih.gov/pubmed/30581379 http://dx.doi.org/10.3389/fncel.2018.00481 |
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