Cargando…

Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina

Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays...

Descripción completa

Detalles Bibliográficos
Autores principales: Jouty, Jonathan, Hilgen, Gerrit, Sernagor, Evelyne, Hennig, Matthias H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292960/
https://www.ncbi.nlm.nih.gov/pubmed/30581379
http://dx.doi.org/10.3389/fncel.2018.00481
_version_ 1783380467310919680
author Jouty, Jonathan
Hilgen, Gerrit
Sernagor, Evelyne
Hennig, Matthias H.
author_facet Jouty, Jonathan
Hilgen, Gerrit
Sernagor, Evelyne
Hennig, Matthias H.
author_sort Jouty, Jonathan
collection PubMed
description Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities.
format Online
Article
Text
id pubmed-6292960
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-62929602018-12-21 Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina Jouty, Jonathan Hilgen, Gerrit Sernagor, Evelyne Hennig, Matthias H. Front Cell Neurosci Neuroscience Retinal ganglion cells, the sole output neurons of the retina, exhibit surprising diversity. A recent study reported over 30 distinct types in the mouse retina, indicating that the processing of visual information is highly parallelised in the brain. The advent of high density multi-electrode arrays now enables recording from many hundreds to thousands of neurons from a single retina. Here we describe a method for the automatic classification of large-scale retinal recordings using a simple stimulus paradigm and a spike train distance measure as a clustering metric. We evaluate our approach using synthetic spike trains, and demonstrate that major known cell types are identified in high-density recording sessions from the mouse retina with around 1,000 retinal ganglion cells. A comparison across different retinas reveals substantial variability between preparations, suggesting pooling data across retinas should be approached with caution. As a parameter-free method, our approach is broadly applicable for cellular physiological classification in all sensory modalities. Frontiers Media S.A. 2018-12-07 /pmc/articles/PMC6292960/ /pubmed/30581379 http://dx.doi.org/10.3389/fncel.2018.00481 Text en Copyright © 2018 Jouty, Hilgen, Sernagor and Hennig. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Jouty, Jonathan
Hilgen, Gerrit
Sernagor, Evelyne
Hennig, Matthias H.
Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title_full Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title_fullStr Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title_full_unstemmed Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title_short Non-parametric Physiological Classification of Retinal Ganglion Cells in the Mouse Retina
title_sort non-parametric physiological classification of retinal ganglion cells in the mouse retina
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292960/
https://www.ncbi.nlm.nih.gov/pubmed/30581379
http://dx.doi.org/10.3389/fncel.2018.00481
work_keys_str_mv AT joutyjonathan nonparametricphysiologicalclassificationofretinalganglioncellsinthemouseretina
AT hilgengerrit nonparametricphysiologicalclassificationofretinalganglioncellsinthemouseretina
AT sernagorevelyne nonparametricphysiologicalclassificationofretinalganglioncellsinthemouseretina
AT hennigmatthiash nonparametricphysiologicalclassificationofretinalganglioncellsinthemouseretina