Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method

We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication “A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-r...

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Detalles Bibliográficos
Autores principales: Drawert, Brian, Jacob, Bruno, Li, Zhen, Yi, Tau-Mu, Petzold, Linda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Energy
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6293021/
https://www.ncbi.nlm.nih.gov/pubmed/30581900
http://dx.doi.org/10.1016/j.dib.2018.11.103
Descripción
Sumario:We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication “A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems” (Drawert et al., 2019). We validate 1D diffusion, and 2D diffusion cases against their analytical solutions. We present graphs and tables of data showing the error in the simulation method.

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