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Optimizing Nonbonded Interactions of the OPLS Force Field for Aqueous Solutions of Carbohydrates: How to Capture Both Thermodynamics and Dynamics
[Image: see text] Knowledge on thermodynamic and transport properties of aqueous solutions of carbohydrates is of great interest for process and product design in the food, pharmaceutical, and biotechnological industries. Molecular simulation is a powerful tool to calculate these properties, but cur...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6293444/ https://www.ncbi.nlm.nih.gov/pubmed/30407814 http://dx.doi.org/10.1021/acs.jctc.8b00909 |
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author | Jamali, Seyed Hossein Westen, Thijs van Moultos, Othonas A. Vlugt, Thijs J. H. |
author_facet | Jamali, Seyed Hossein Westen, Thijs van Moultos, Othonas A. Vlugt, Thijs J. H. |
author_sort | Jamali, Seyed Hossein |
collection | PubMed |
description | [Image: see text] Knowledge on thermodynamic and transport properties of aqueous solutions of carbohydrates is of great interest for process and product design in the food, pharmaceutical, and biotechnological industries. Molecular simulation is a powerful tool to calculate these properties, but current classical force fields cannot provide accurate estimates for all properties of interest. The poor performance of the force fields is mainly observed for concentrated solutions, where solute–solute interactions are overestimated. In this study, we propose a method to refine force fields, such that solute–solute interactions are more accurately described. The OPLS force field combined with the SPC/Fw water model is used as a basis. We scale the nonbonded interaction parameters of sucrose, a disaccharide. The scaling factors are chosen in such a way that experimental thermodynamic and transport properties of aqueous solutions of sucrose are accurately reproduced. Using a scaling factor of 0.8 for Lennard-Jones energy parameters (ϵ) and a scaling factor of 0.95 for partial atomic charges (q), we find excellent agreement between experiments and computed liquid densities, thermodynamic factors, shear viscosities, self-diffusion coefficients, and Fick (mutual) diffusion coefficients. The transferability of these optimum scaling factors to other carbohydrates is verified by computing thermodynamic and transport properties of aqueous solutions of d-glucose, a monosaccharide. The good agreement between computed properties and experiments suggests that the scaled interaction parameters are transferable to other carbohydrates, especially for concentrated solutions. |
format | Online Article Text |
id | pubmed-6293444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-62934442018-12-15 Optimizing Nonbonded Interactions of the OPLS Force Field for Aqueous Solutions of Carbohydrates: How to Capture Both Thermodynamics and Dynamics Jamali, Seyed Hossein Westen, Thijs van Moultos, Othonas A. Vlugt, Thijs J. H. J Chem Theory Comput [Image: see text] Knowledge on thermodynamic and transport properties of aqueous solutions of carbohydrates is of great interest for process and product design in the food, pharmaceutical, and biotechnological industries. Molecular simulation is a powerful tool to calculate these properties, but current classical force fields cannot provide accurate estimates for all properties of interest. The poor performance of the force fields is mainly observed for concentrated solutions, where solute–solute interactions are overestimated. In this study, we propose a method to refine force fields, such that solute–solute interactions are more accurately described. The OPLS force field combined with the SPC/Fw water model is used as a basis. We scale the nonbonded interaction parameters of sucrose, a disaccharide. The scaling factors are chosen in such a way that experimental thermodynamic and transport properties of aqueous solutions of sucrose are accurately reproduced. Using a scaling factor of 0.8 for Lennard-Jones energy parameters (ϵ) and a scaling factor of 0.95 for partial atomic charges (q), we find excellent agreement between experiments and computed liquid densities, thermodynamic factors, shear viscosities, self-diffusion coefficients, and Fick (mutual) diffusion coefficients. The transferability of these optimum scaling factors to other carbohydrates is verified by computing thermodynamic and transport properties of aqueous solutions of d-glucose, a monosaccharide. The good agreement between computed properties and experiments suggests that the scaled interaction parameters are transferable to other carbohydrates, especially for concentrated solutions. American Chemical Society 2018-11-08 2018-12-11 /pmc/articles/PMC6293444/ /pubmed/30407814 http://dx.doi.org/10.1021/acs.jctc.8b00909 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Jamali, Seyed Hossein Westen, Thijs van Moultos, Othonas A. Vlugt, Thijs J. H. Optimizing Nonbonded Interactions of the OPLS Force Field for Aqueous Solutions of Carbohydrates: How to Capture Both Thermodynamics and Dynamics |
title | Optimizing Nonbonded Interactions of the OPLS Force
Field for Aqueous Solutions of Carbohydrates: How to Capture Both
Thermodynamics and Dynamics |
title_full | Optimizing Nonbonded Interactions of the OPLS Force
Field for Aqueous Solutions of Carbohydrates: How to Capture Both
Thermodynamics and Dynamics |
title_fullStr | Optimizing Nonbonded Interactions of the OPLS Force
Field for Aqueous Solutions of Carbohydrates: How to Capture Both
Thermodynamics and Dynamics |
title_full_unstemmed | Optimizing Nonbonded Interactions of the OPLS Force
Field for Aqueous Solutions of Carbohydrates: How to Capture Both
Thermodynamics and Dynamics |
title_short | Optimizing Nonbonded Interactions of the OPLS Force
Field for Aqueous Solutions of Carbohydrates: How to Capture Both
Thermodynamics and Dynamics |
title_sort | optimizing nonbonded interactions of the opls force
field for aqueous solutions of carbohydrates: how to capture both
thermodynamics and dynamics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6293444/ https://www.ncbi.nlm.nih.gov/pubmed/30407814 http://dx.doi.org/10.1021/acs.jctc.8b00909 |
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