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Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems

Explaining the origin of life requires us to elucidate how self-replication arises. To be specific, how can a self-replicating entity develop spontaneously from a chemical reaction system in which no reaction is self-replicating? Previously proposed mathematical models either supply an explicit fram...

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Detalles Bibliográficos
Autores principales: Liu, Yu, Sumpter, David J. T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Biochemistry and Molecular Biology 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6295724/
https://www.ncbi.nlm.nih.gov/pubmed/30282809
http://dx.doi.org/10.1074/jbc.RA118.003795
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author Liu, Yu
Sumpter, David J. T.
author_facet Liu, Yu
Sumpter, David J. T.
author_sort Liu, Yu
collection PubMed
description Explaining the origin of life requires us to elucidate how self-replication arises. To be specific, how can a self-replicating entity develop spontaneously from a chemical reaction system in which no reaction is self-replicating? Previously proposed mathematical models either supply an explicit framework for a minimal living system or consider only catalyzed reactions, and thus fail to provide a comprehensive theory. Here, we set up a general mathematical model for chemical reaction systems that properly accounts for energetics, kinetics, and the conservation law. We found that 1) some systems are collectively catalytic, a mode whereby reactants are transformed into end products with the assistance of intermediates (as in the citric acid cycle), whereas some others are self-replicating, that is, different parts replicate each other and the system self-replicates as a whole (as in the formose reaction, in which sugar is replicated from formaldehyde); 2) side reactions do not always inhibit such systems; 3) randomly chosen chemical universes (namely random artificial chemistries) often contain one or more such systems; 4) it is possible to construct a self-replicating system in which the entropy of some parts spontaneously decreases, in a manner similar to that discussed by Schrödinger; and 5) complex self-replicating molecules can emerge spontaneously and relatively easily from simple chemical reaction systems through a sequence of transitions. Together, these results start to explain the origins of prebiotic evolution.
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spelling pubmed-62957242018-12-18 Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems Liu, Yu Sumpter, David J. T. J Biol Chem Metabolism Explaining the origin of life requires us to elucidate how self-replication arises. To be specific, how can a self-replicating entity develop spontaneously from a chemical reaction system in which no reaction is self-replicating? Previously proposed mathematical models either supply an explicit framework for a minimal living system or consider only catalyzed reactions, and thus fail to provide a comprehensive theory. Here, we set up a general mathematical model for chemical reaction systems that properly accounts for energetics, kinetics, and the conservation law. We found that 1) some systems are collectively catalytic, a mode whereby reactants are transformed into end products with the assistance of intermediates (as in the citric acid cycle), whereas some others are self-replicating, that is, different parts replicate each other and the system self-replicates as a whole (as in the formose reaction, in which sugar is replicated from formaldehyde); 2) side reactions do not always inhibit such systems; 3) randomly chosen chemical universes (namely random artificial chemistries) often contain one or more such systems; 4) it is possible to construct a self-replicating system in which the entropy of some parts spontaneously decreases, in a manner similar to that discussed by Schrödinger; and 5) complex self-replicating molecules can emerge spontaneously and relatively easily from simple chemical reaction systems through a sequence of transitions. Together, these results start to explain the origins of prebiotic evolution. American Society for Biochemistry and Molecular Biology 2018-12-07 2018-10-03 /pmc/articles/PMC6295724/ /pubmed/30282809 http://dx.doi.org/10.1074/jbc.RA118.003795 Text en © 2018 Liu and Sumpter. Author's Choice—Final version open access under the terms of the Creative Commons CC-BY license (http://creativecommons.org/licenses/by/4.0) .
spellingShingle Metabolism
Liu, Yu
Sumpter, David J. T.
Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title_full Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title_fullStr Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title_full_unstemmed Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title_short Mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
title_sort mathematical modeling reveals spontaneous emergence of self-replication in chemical reaction systems
topic Metabolism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6295724/
https://www.ncbi.nlm.nih.gov/pubmed/30282809
http://dx.doi.org/10.1074/jbc.RA118.003795
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