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Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis

In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of varia...

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Autores principales: Chowdhury, Tanmay, Mandal, Amitava, Roy, Subhas Chandra, De Sarker, Dilip
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academy of Scientific Research and Technology, Egypt 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296643/
https://www.ncbi.nlm.nih.gov/pubmed/30647664
http://dx.doi.org/10.1016/j.jgeb.2016.12.004
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author Chowdhury, Tanmay
Mandal, Amitava
Roy, Subhas Chandra
De Sarker, Dilip
author_facet Chowdhury, Tanmay
Mandal, Amitava
Roy, Subhas Chandra
De Sarker, Dilip
author_sort Chowdhury, Tanmay
collection PubMed
description In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of variation present in the genus Ocimum. Among nine Ocimum genotypes six (O. americanum, O. × africanum, O. basilicum, O. gratissimum, O. kilimandscharicum and O. tenuiflorum) are found to be different Ocimum species and the rest are as varieties. A total of 18 qualitative and 17 quantitative morphological traits and chemical compositions were evaluated. Significant variations were observed in the morphological traits except O. × africanum and O. basilicum species. Cluster generated from the morphological data showed two different groups viz. basilicum group and sanctum group. Chemical analysis did not show much variation between morphologically similar species viz. O. × africanum and O. basilicum. However, RAPD analyses clearly showed that O. × africanum and O. basilicum are different species. Thus the combined analyses of morphological traits, chemical and molecular markers represent the best possible approach to confirm taxonomic delineation. Moreover, we are reporting O. × africanum for the first time from this region as well as from West Bengal, India.
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spelling pubmed-62966432019-01-15 Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis Chowdhury, Tanmay Mandal, Amitava Roy, Subhas Chandra De Sarker, Dilip J Genet Eng Biotechnol VI : Plant Biotechnology In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of variation present in the genus Ocimum. Among nine Ocimum genotypes six (O. americanum, O. × africanum, O. basilicum, O. gratissimum, O. kilimandscharicum and O. tenuiflorum) are found to be different Ocimum species and the rest are as varieties. A total of 18 qualitative and 17 quantitative morphological traits and chemical compositions were evaluated. Significant variations were observed in the morphological traits except O. × africanum and O. basilicum species. Cluster generated from the morphological data showed two different groups viz. basilicum group and sanctum group. Chemical analysis did not show much variation between morphologically similar species viz. O. × africanum and O. basilicum. However, RAPD analyses clearly showed that O. × africanum and O. basilicum are different species. Thus the combined analyses of morphological traits, chemical and molecular markers represent the best possible approach to confirm taxonomic delineation. Moreover, we are reporting O. × africanum for the first time from this region as well as from West Bengal, India. Academy of Scientific Research and Technology, Egypt 2017-06 2017-01-09 /pmc/articles/PMC6296643/ /pubmed/30647664 http://dx.doi.org/10.1016/j.jgeb.2016.12.004 Text en © 2017 Production and hosting by Elsevier B.V. on behalf of Academy of Scientific Research & Technology. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle VI : Plant Biotechnology
Chowdhury, Tanmay
Mandal, Amitava
Roy, Subhas Chandra
De Sarker, Dilip
Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title_full Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title_fullStr Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title_full_unstemmed Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title_short Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
title_sort diversity of the genus ocimum (lamiaceae) through morpho-molecular (rapd) and chemical (gc–ms) analysis
topic VI : Plant Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296643/
https://www.ncbi.nlm.nih.gov/pubmed/30647664
http://dx.doi.org/10.1016/j.jgeb.2016.12.004
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