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Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis
In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of varia...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academy of Scientific Research and Technology, Egypt
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296643/ https://www.ncbi.nlm.nih.gov/pubmed/30647664 http://dx.doi.org/10.1016/j.jgeb.2016.12.004 |
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author | Chowdhury, Tanmay Mandal, Amitava Roy, Subhas Chandra De Sarker, Dilip |
author_facet | Chowdhury, Tanmay Mandal, Amitava Roy, Subhas Chandra De Sarker, Dilip |
author_sort | Chowdhury, Tanmay |
collection | PubMed |
description | In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of variation present in the genus Ocimum. Among nine Ocimum genotypes six (O. americanum, O. × africanum, O. basilicum, O. gratissimum, O. kilimandscharicum and O. tenuiflorum) are found to be different Ocimum species and the rest are as varieties. A total of 18 qualitative and 17 quantitative morphological traits and chemical compositions were evaluated. Significant variations were observed in the morphological traits except O. × africanum and O. basilicum species. Cluster generated from the morphological data showed two different groups viz. basilicum group and sanctum group. Chemical analysis did not show much variation between morphologically similar species viz. O. × africanum and O. basilicum. However, RAPD analyses clearly showed that O. × africanum and O. basilicum are different species. Thus the combined analyses of morphological traits, chemical and molecular markers represent the best possible approach to confirm taxonomic delineation. Moreover, we are reporting O. × africanum for the first time from this region as well as from West Bengal, India. |
format | Online Article Text |
id | pubmed-6296643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Academy of Scientific Research and Technology, Egypt |
record_format | MEDLINE/PubMed |
spelling | pubmed-62966432019-01-15 Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis Chowdhury, Tanmay Mandal, Amitava Roy, Subhas Chandra De Sarker, Dilip J Genet Eng Biotechnol VI : Plant Biotechnology In this present study, we have described the diversity of nine Ocimum genotypes naturally grown in the Dakshin Dinajpur district of West Bengal, India. Their diversity was determined on the basis of morphological, chemical and randomly amplified polymorphic DNA (RAPD) to determine the level of variation present in the genus Ocimum. Among nine Ocimum genotypes six (O. americanum, O. × africanum, O. basilicum, O. gratissimum, O. kilimandscharicum and O. tenuiflorum) are found to be different Ocimum species and the rest are as varieties. A total of 18 qualitative and 17 quantitative morphological traits and chemical compositions were evaluated. Significant variations were observed in the morphological traits except O. × africanum and O. basilicum species. Cluster generated from the morphological data showed two different groups viz. basilicum group and sanctum group. Chemical analysis did not show much variation between morphologically similar species viz. O. × africanum and O. basilicum. However, RAPD analyses clearly showed that O. × africanum and O. basilicum are different species. Thus the combined analyses of morphological traits, chemical and molecular markers represent the best possible approach to confirm taxonomic delineation. Moreover, we are reporting O. × africanum for the first time from this region as well as from West Bengal, India. Academy of Scientific Research and Technology, Egypt 2017-06 2017-01-09 /pmc/articles/PMC6296643/ /pubmed/30647664 http://dx.doi.org/10.1016/j.jgeb.2016.12.004 Text en © 2017 Production and hosting by Elsevier B.V. on behalf of Academy of Scientific Research & Technology. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | VI : Plant Biotechnology Chowdhury, Tanmay Mandal, Amitava Roy, Subhas Chandra De Sarker, Dilip Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title | Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title_full | Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title_fullStr | Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title_full_unstemmed | Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title_short | Diversity of the genus Ocimum (Lamiaceae) through morpho-molecular (RAPD) and chemical (GC–MS) analysis |
title_sort | diversity of the genus ocimum (lamiaceae) through morpho-molecular (rapd) and chemical (gc–ms) analysis |
topic | VI : Plant Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296643/ https://www.ncbi.nlm.nih.gov/pubmed/30647664 http://dx.doi.org/10.1016/j.jgeb.2016.12.004 |
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