Cargando…

Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury

The aim of the present study was to identify genes and functional pathways associated with meniscal injuries affected by age or body mass index (BMI) using microarray analysis. The GSE45233 gene expression dataset with 12 injured meniscus samples associated with age and BMI and GSE66635 dataset with...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Peiyan, Gu, Jun, Wu, Junguo, Geng, Lei, Hong, Yang, Wang, Siqun, Wang, Minghai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6297773/
https://www.ncbi.nlm.nih.gov/pubmed/30483788
http://dx.doi.org/10.3892/mmr.2018.9685
_version_ 1783381202558779392
author Huang, Peiyan
Gu, Jun
Wu, Junguo
Geng, Lei
Hong, Yang
Wang, Siqun
Wang, Minghai
author_facet Huang, Peiyan
Gu, Jun
Wu, Junguo
Geng, Lei
Hong, Yang
Wang, Siqun
Wang, Minghai
author_sort Huang, Peiyan
collection PubMed
description The aim of the present study was to identify genes and functional pathways associated with meniscal injuries affected by age or body mass index (BMI) using microarray analysis. The GSE45233 gene expression dataset with 12 injured meniscus samples associated with age and BMI and GSE66635 dataset with 12 injured and 12 normal meniscus samples were downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were identified based on age or BMI in GSE45233. DEGs between injured and normal meniscus samples in GSE66635 were also identified. Common DEGs between GSE45233 and GSE66635 were identified as feature genes associated with age or BMI, followed by protein-protein interaction (PPI) network and functional pathway enrichment analyses for the feature genes. Finally, the GSE51588 genome-wide expression profile was then downloaded from the GEO database to validate the results. A total of 1,328 DEGs were identified. Of these, 28 age-associated and 20 BMI-associated meniscal injury genes were obtained. B-cell lymphoma-2 (Bcl-2) and matrix metalloproteinase-14 were identified as hub genes in the PPI networks. Functional pathway enrichment analysis revealed that vascular endothelial growth factor A (VEGFA), transferrin (TF) and Bcl-2 were involved in the hypoxia-inducible factor 1 signaling pathway. TF was involved in the mineral absorption function pathway associated with BMI. Additionally, TF and VEGFA were identified to be overlapping candidate genes of GSE45233 and GSE66635, and DEGs in GSE51588. Therefore, VEGFA, TF, and Bcl-2 may be important genes for human meniscal injuries. Additional evaluations of these results are required.
format Online
Article
Text
id pubmed-6297773
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher D.A. Spandidos
record_format MEDLINE/PubMed
spelling pubmed-62977732018-12-26 Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury Huang, Peiyan Gu, Jun Wu, Junguo Geng, Lei Hong, Yang Wang, Siqun Wang, Minghai Mol Med Rep Articles The aim of the present study was to identify genes and functional pathways associated with meniscal injuries affected by age or body mass index (BMI) using microarray analysis. The GSE45233 gene expression dataset with 12 injured meniscus samples associated with age and BMI and GSE66635 dataset with 12 injured and 12 normal meniscus samples were downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were identified based on age or BMI in GSE45233. DEGs between injured and normal meniscus samples in GSE66635 were also identified. Common DEGs between GSE45233 and GSE66635 were identified as feature genes associated with age or BMI, followed by protein-protein interaction (PPI) network and functional pathway enrichment analyses for the feature genes. Finally, the GSE51588 genome-wide expression profile was then downloaded from the GEO database to validate the results. A total of 1,328 DEGs were identified. Of these, 28 age-associated and 20 BMI-associated meniscal injury genes were obtained. B-cell lymphoma-2 (Bcl-2) and matrix metalloproteinase-14 were identified as hub genes in the PPI networks. Functional pathway enrichment analysis revealed that vascular endothelial growth factor A (VEGFA), transferrin (TF) and Bcl-2 were involved in the hypoxia-inducible factor 1 signaling pathway. TF was involved in the mineral absorption function pathway associated with BMI. Additionally, TF and VEGFA were identified to be overlapping candidate genes of GSE45233 and GSE66635, and DEGs in GSE51588. Therefore, VEGFA, TF, and Bcl-2 may be important genes for human meniscal injuries. Additional evaluations of these results are required. D.A. Spandidos 2019-01 2018-11-21 /pmc/articles/PMC6297773/ /pubmed/30483788 http://dx.doi.org/10.3892/mmr.2018.9685 Text en Copyright: © Huang et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Huang, Peiyan
Gu, Jun
Wu, Junguo
Geng, Lei
Hong, Yang
Wang, Siqun
Wang, Minghai
Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title_full Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title_fullStr Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title_full_unstemmed Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title_short Microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
title_sort microarray analysis of the molecular mechanisms associated with age and body mass index in human meniscal injury
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6297773/
https://www.ncbi.nlm.nih.gov/pubmed/30483788
http://dx.doi.org/10.3892/mmr.2018.9685
work_keys_str_mv AT huangpeiyan microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT gujun microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT wujunguo microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT genglei microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT hongyang microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT wangsiqun microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury
AT wangminghai microarrayanalysisofthemolecularmechanismsassociatedwithageandbodymassindexinhumanmeniscalinjury