Cargando…

SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data

SUMMARY: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the comple...

Descripción completa

Detalles Bibliográficos
Autores principales: Inglese, Paolo, Correia, Gonçalo, Takats, Zoltan, Nicholson, Jeremy K, Glen, Robert C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298046/
https://www.ncbi.nlm.nih.gov/pubmed/30010780
http://dx.doi.org/10.1093/bioinformatics/bty622
Descripción
Sumario:SUMMARY: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results. AVAILABILITY AND IMPLEMENTATION: SPUTNIK is freely available online from CRAN repository and at https://github.com/paoloinglese/SPUTNIK. The package is distributed under the GNU General Public License version 3 and is accompanied by example files and data. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.