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SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data

SUMMARY: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the comple...

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Detalles Bibliográficos
Autores principales: Inglese, Paolo, Correia, Gonçalo, Takats, Zoltan, Nicholson, Jeremy K, Glen, Robert C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298046/
https://www.ncbi.nlm.nih.gov/pubmed/30010780
http://dx.doi.org/10.1093/bioinformatics/bty622
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author Inglese, Paolo
Correia, Gonçalo
Takats, Zoltan
Nicholson, Jeremy K
Glen, Robert C
author_facet Inglese, Paolo
Correia, Gonçalo
Takats, Zoltan
Nicholson, Jeremy K
Glen, Robert C
author_sort Inglese, Paolo
collection PubMed
description SUMMARY: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results. AVAILABILITY AND IMPLEMENTATION: SPUTNIK is freely available online from CRAN repository and at https://github.com/paoloinglese/SPUTNIK. The package is distributed under the GNU General Public License version 3 and is accompanied by example files and data. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-62980462018-12-21 SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data Inglese, Paolo Correia, Gonçalo Takats, Zoltan Nicholson, Jeremy K Glen, Robert C Bioinformatics Applications Notes SUMMARY: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results. AVAILABILITY AND IMPLEMENTATION: SPUTNIK is freely available online from CRAN repository and at https://github.com/paoloinglese/SPUTNIK. The package is distributed under the GNU General Public License version 3 and is accompanied by example files and data. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-01-01 2018-07-13 /pmc/articles/PMC6298046/ /pubmed/30010780 http://dx.doi.org/10.1093/bioinformatics/bty622 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Inglese, Paolo
Correia, Gonçalo
Takats, Zoltan
Nicholson, Jeremy K
Glen, Robert C
SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title_full SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title_fullStr SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title_full_unstemmed SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title_short SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
title_sort sputnik: an r package for filtering of spatially related peaks in mass spectrometry imaging data
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298046/
https://www.ncbi.nlm.nih.gov/pubmed/30010780
http://dx.doi.org/10.1093/bioinformatics/bty622
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