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Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution

BACKGROUND: In an effort to provide improved user experience and system reliability at a moderate cost, our department embarked on targeted upgrades of a total of 87 computers over a period of 3 years. Upgrades came in three forms: (i) replacement of the computer with newer architecture, (ii) replac...

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Autores principales: Zarella, Mark D., Feldscher, Adam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298129/
https://www.ncbi.nlm.nih.gov/pubmed/30622834
http://dx.doi.org/10.4103/jpi.jpi_47_18
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author Zarella, Mark D.
Feldscher, Adam
author_facet Zarella, Mark D.
Feldscher, Adam
author_sort Zarella, Mark D.
collection PubMed
description BACKGROUND: In an effort to provide improved user experience and system reliability at a moderate cost, our department embarked on targeted upgrades of a total of 87 computers over a period of 3 years. Upgrades came in three forms: (i) replacement of the computer with newer architecture, (ii) replacement of the computer's hard drive with a solid-state drive (SSD), or (iii) replacement of the computer with newer architecture and a SSD. METHODS: We measured the impact of each form of upgrade on a set of pathology-relevant tasks that fell into three categories: standard use, whole-slide navigation, and whole-slide analysis. We used time to completion of a task as the primary variable of interest. RESULTS: We found that for most tasks, the SSD upgrade had a greater impact than the upgrade in architecture. This effect was especially prominent for whole-slide viewing, likely due to the way in which most whole-slide viewers cached image tiles. However, other tasks, such as whole-slide image analysis, often relied less on disk input or output and were instead more sensitive to the computer architecture. CONCLUSIONS: Based on our experience, we suggest that SSD upgrades are viewed in some settings as a viable alternative to complete computer replacement and recommend that computer replacements in a digital pathology setting are accompanied by an upgrade to SSDs.
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spelling pubmed-62981292019-01-08 Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution Zarella, Mark D. Feldscher, Adam J Pathol Inform Original Article BACKGROUND: In an effort to provide improved user experience and system reliability at a moderate cost, our department embarked on targeted upgrades of a total of 87 computers over a period of 3 years. Upgrades came in three forms: (i) replacement of the computer with newer architecture, (ii) replacement of the computer's hard drive with a solid-state drive (SSD), or (iii) replacement of the computer with newer architecture and a SSD. METHODS: We measured the impact of each form of upgrade on a set of pathology-relevant tasks that fell into three categories: standard use, whole-slide navigation, and whole-slide analysis. We used time to completion of a task as the primary variable of interest. RESULTS: We found that for most tasks, the SSD upgrade had a greater impact than the upgrade in architecture. This effect was especially prominent for whole-slide viewing, likely due to the way in which most whole-slide viewers cached image tiles. However, other tasks, such as whole-slide image analysis, often relied less on disk input or output and were instead more sensitive to the computer architecture. CONCLUSIONS: Based on our experience, we suggest that SSD upgrades are viewed in some settings as a viable alternative to complete computer replacement and recommend that computer replacements in a digital pathology setting are accompanied by an upgrade to SSDs. Medknow Publications & Media Pvt Ltd 2018-12-11 /pmc/articles/PMC6298129/ /pubmed/30622834 http://dx.doi.org/10.4103/jpi.jpi_47_18 Text en Copyright: © 2018 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Zarella, Mark D.
Feldscher, Adam
Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title_full Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title_fullStr Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title_full_unstemmed Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title_short Laboratory Computer Performance in a Digital Pathology Environment: Outcomes from a Single Institution
title_sort laboratory computer performance in a digital pathology environment: outcomes from a single institution
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298129/
https://www.ncbi.nlm.nih.gov/pubmed/30622834
http://dx.doi.org/10.4103/jpi.jpi_47_18
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