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A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene
It is well-established that there is a strong genetic contribution to the aetiology of attention deficit hyperactivity disorder (ADHD). Here, we employed a hypothesis-free genome-wide association study (GWAS) design in a sample of 480 clinical childhood ADHD cases and 1208 controls to search for nov...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298965/ https://www.ncbi.nlm.nih.gov/pubmed/30563984 http://dx.doi.org/10.1038/s41398-018-0329-x |
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author | Hawi, Ziarih Yates, Hannah Pinar, Ari Arnatkeviciute, Aurina Johnson, Beth Tong, Janette Pugsley, Kealan Dark, Callum Pauper, Marc Klein, Marieke Heussler, Helen S. Hiscock, Harriet Fornito, Alex Tiego, Jeggan Finlay, Amy Vance, Alasdair Gill, Michael Kent, Lindsey Bellgrove, Mark A. |
author_facet | Hawi, Ziarih Yates, Hannah Pinar, Ari Arnatkeviciute, Aurina Johnson, Beth Tong, Janette Pugsley, Kealan Dark, Callum Pauper, Marc Klein, Marieke Heussler, Helen S. Hiscock, Harriet Fornito, Alex Tiego, Jeggan Finlay, Amy Vance, Alasdair Gill, Michael Kent, Lindsey Bellgrove, Mark A. |
author_sort | Hawi, Ziarih |
collection | PubMed |
description | It is well-established that there is a strong genetic contribution to the aetiology of attention deficit hyperactivity disorder (ADHD). Here, we employed a hypothesis-free genome-wide association study (GWAS) design in a sample of 480 clinical childhood ADHD cases and 1208 controls to search for novel genetic risk loci for ADHD. DNA was genotyped using Illumina’s Human Infinium PsychArray-24v1.2., and the data were subsequently imputed to the 1000 Genomes reference panel. Rigorous quality control and pruning of genotypes at both individual subject and single nucleotide polymorphism (SNP) levels was performed. Polygenic risk score (PGRS) analysis revealed that ADHD case–control status was explained by genetic risk for ADHD, but no other major psychiatric disorders. Logistic regression analysis was performed genome-wide to test the association between SNPs and ADHD case–control status. We observed a genome-wide significant association (p = 3.15E−08) between ADHD and rs6686722, mapped to the Tenascin R (TNR) gene. Members of this gene family are extracellular matrix glycoproteins that play a role in neural cell adhesion and neurite outgrowth. Suggestive evidence of associations with ADHD was observed for an additional 111 SNPs (⩽9.91E−05). Although intriguing, the association between DNA variation in the TNR gene and ADHD should be viewed as preliminary given the small sample size of this discovery dataset. |
format | Online Article Text |
id | pubmed-6298965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62989652018-12-26 A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene Hawi, Ziarih Yates, Hannah Pinar, Ari Arnatkeviciute, Aurina Johnson, Beth Tong, Janette Pugsley, Kealan Dark, Callum Pauper, Marc Klein, Marieke Heussler, Helen S. Hiscock, Harriet Fornito, Alex Tiego, Jeggan Finlay, Amy Vance, Alasdair Gill, Michael Kent, Lindsey Bellgrove, Mark A. Transl Psychiatry Article It is well-established that there is a strong genetic contribution to the aetiology of attention deficit hyperactivity disorder (ADHD). Here, we employed a hypothesis-free genome-wide association study (GWAS) design in a sample of 480 clinical childhood ADHD cases and 1208 controls to search for novel genetic risk loci for ADHD. DNA was genotyped using Illumina’s Human Infinium PsychArray-24v1.2., and the data were subsequently imputed to the 1000 Genomes reference panel. Rigorous quality control and pruning of genotypes at both individual subject and single nucleotide polymorphism (SNP) levels was performed. Polygenic risk score (PGRS) analysis revealed that ADHD case–control status was explained by genetic risk for ADHD, but no other major psychiatric disorders. Logistic regression analysis was performed genome-wide to test the association between SNPs and ADHD case–control status. We observed a genome-wide significant association (p = 3.15E−08) between ADHD and rs6686722, mapped to the Tenascin R (TNR) gene. Members of this gene family are extracellular matrix glycoproteins that play a role in neural cell adhesion and neurite outgrowth. Suggestive evidence of associations with ADHD was observed for an additional 111 SNPs (⩽9.91E−05). Although intriguing, the association between DNA variation in the TNR gene and ADHD should be viewed as preliminary given the small sample size of this discovery dataset. Nature Publishing Group UK 2018-12-18 /pmc/articles/PMC6298965/ /pubmed/30563984 http://dx.doi.org/10.1038/s41398-018-0329-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Hawi, Ziarih Yates, Hannah Pinar, Ari Arnatkeviciute, Aurina Johnson, Beth Tong, Janette Pugsley, Kealan Dark, Callum Pauper, Marc Klein, Marieke Heussler, Helen S. Hiscock, Harriet Fornito, Alex Tiego, Jeggan Finlay, Amy Vance, Alasdair Gill, Michael Kent, Lindsey Bellgrove, Mark A. A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title | A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title_full | A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title_fullStr | A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title_full_unstemmed | A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title_short | A case–control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene |
title_sort | case–control genome-wide association study of adhd discovers a novel association with the tenascin r (tnr) gene |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298965/ https://www.ncbi.nlm.nih.gov/pubmed/30563984 http://dx.doi.org/10.1038/s41398-018-0329-x |
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