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Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery
The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes prolifer...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298976/ https://www.ncbi.nlm.nih.gov/pubmed/30560869 http://dx.doi.org/10.1038/s41598-018-36124-6 |
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author | Yamada, Takahiro G. Suetsugu, Yoshitaka Deviatiiarov, Ruslan Gusev, Oleg Cornette, Richard Nesmelov, Alexander Hiroi, Noriko Kikawada, Takahiro Funahashi, Akira |
author_facet | Yamada, Takahiro G. Suetsugu, Yoshitaka Deviatiiarov, Ruslan Gusev, Oleg Cornette, Richard Nesmelov, Alexander Hiroi, Noriko Kikawada, Takahiro Funahashi, Akira |
author_sort | Yamada, Takahiro G. |
collection | PubMed |
description | The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes proliferation after rehydration. However, the molecular mechanisms of this desiccation tolerance remain unknown. Here, we performed high-throughput CAGE-seq of mRNA and a differentially expressed gene analysis in trehalose-treated, desiccated, and rehydrated Pv11 cells, followed by gene ontology analysis of the identified differentially expressed genes. We detected differentially expressed genes after trehalose treatment involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction that were upregulated. In the desiccation phase, L-isoaspartyl methyltransferase and heat shock proteins were upregulated and ribosomal proteins were downregulated. Analysis of differentially expressed genes during rehydration supported the notion that homologous recombination, nucleotide excision repair, and non-homologous recombination were involved in the recovery process. This study provides initial insights into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells. |
format | Online Article Text |
id | pubmed-6298976 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62989762018-12-26 Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery Yamada, Takahiro G. Suetsugu, Yoshitaka Deviatiiarov, Ruslan Gusev, Oleg Cornette, Richard Nesmelov, Alexander Hiroi, Noriko Kikawada, Takahiro Funahashi, Akira Sci Rep Article The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki embryo, shows desiccation tolerance when treated with trehalose before desiccation and resumes proliferation after rehydration. However, the molecular mechanisms of this desiccation tolerance remain unknown. Here, we performed high-throughput CAGE-seq of mRNA and a differentially expressed gene analysis in trehalose-treated, desiccated, and rehydrated Pv11 cells, followed by gene ontology analysis of the identified differentially expressed genes. We detected differentially expressed genes after trehalose treatment involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction that were upregulated. In the desiccation phase, L-isoaspartyl methyltransferase and heat shock proteins were upregulated and ribosomal proteins were downregulated. Analysis of differentially expressed genes during rehydration supported the notion that homologous recombination, nucleotide excision repair, and non-homologous recombination were involved in the recovery process. This study provides initial insights into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells. Nature Publishing Group UK 2018-12-18 /pmc/articles/PMC6298976/ /pubmed/30560869 http://dx.doi.org/10.1038/s41598-018-36124-6 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yamada, Takahiro G. Suetsugu, Yoshitaka Deviatiiarov, Ruslan Gusev, Oleg Cornette, Richard Nesmelov, Alexander Hiroi, Noriko Kikawada, Takahiro Funahashi, Akira Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title | Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title_full | Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title_fullStr | Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title_full_unstemmed | Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title_short | Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery |
title_sort | transcriptome analysis of the anhydrobiotic cell line pv11 infers the mechanism of desiccation tolerance and recovery |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298976/ https://www.ncbi.nlm.nih.gov/pubmed/30560869 http://dx.doi.org/10.1038/s41598-018-36124-6 |
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