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Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre
Sinking particles transport carbon and nutrients from the surface ocean into the deep sea and are considered hot spots for bacterial diversity and activity. In the oligotrophic oceans, nitrogen (N(2))-fixing organisms (diazotrophs) are an important source of new N but the extent to which these organ...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6299005/ https://www.ncbi.nlm.nih.gov/pubmed/30116043 http://dx.doi.org/10.1038/s41396-018-0259-x |
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author | Farnelid, Hanna Turk-Kubo, Kendra Ploug, Helle Ossolinski, Justin E. Collins, James R. Van Mooy, Benjamin A. S. Zehr, Jonathan P. |
author_facet | Farnelid, Hanna Turk-Kubo, Kendra Ploug, Helle Ossolinski, Justin E. Collins, James R. Van Mooy, Benjamin A. S. Zehr, Jonathan P. |
author_sort | Farnelid, Hanna |
collection | PubMed |
description | Sinking particles transport carbon and nutrients from the surface ocean into the deep sea and are considered hot spots for bacterial diversity and activity. In the oligotrophic oceans, nitrogen (N(2))-fixing organisms (diazotrophs) are an important source of new N but the extent to which these organisms are present and exported on sinking particles is not well known. Sinking particles were collected every 6 h over a 2-day period using net traps deployed at 150 m in the North Pacific Subtropical Gyre. The bacterial community and composition of diazotrophs associated with individual and bulk sinking particles was assessed using 16S rRNA and nifH gene amplicon sequencing. The bacterial community composition in bulk particles remained remarkably consistent throughout time and space while large variations of individually picked particles were observed. This difference suggests that unique biogeochemical conditions within individual particles may offer distinct ecological niches for specialized bacterial taxa. Compared to surrounding seawater, particle samples were enriched in different size classes of globally significant N(2)-fixing cyanobacteria including Trichodesmium, symbionts of diatoms, and the unicellular cyanobacteria Crocosphaera and UCYN-A. The particles also contained nifH gene sequences of diverse non-cyanobacterial diazotrophs suggesting that particles could be loci for N(2) fixation by heterotrophic bacteria. The results demonstrate that diverse diazotrophs were present on particles and that new N may thereby be directly exported from surface waters on sinking particles. |
format | Online Article Text |
id | pubmed-6299005 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62990052018-12-19 Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre Farnelid, Hanna Turk-Kubo, Kendra Ploug, Helle Ossolinski, Justin E. Collins, James R. Van Mooy, Benjamin A. S. Zehr, Jonathan P. ISME J Article Sinking particles transport carbon and nutrients from the surface ocean into the deep sea and are considered hot spots for bacterial diversity and activity. In the oligotrophic oceans, nitrogen (N(2))-fixing organisms (diazotrophs) are an important source of new N but the extent to which these organisms are present and exported on sinking particles is not well known. Sinking particles were collected every 6 h over a 2-day period using net traps deployed at 150 m in the North Pacific Subtropical Gyre. The bacterial community and composition of diazotrophs associated with individual and bulk sinking particles was assessed using 16S rRNA and nifH gene amplicon sequencing. The bacterial community composition in bulk particles remained remarkably consistent throughout time and space while large variations of individually picked particles were observed. This difference suggests that unique biogeochemical conditions within individual particles may offer distinct ecological niches for specialized bacterial taxa. Compared to surrounding seawater, particle samples were enriched in different size classes of globally significant N(2)-fixing cyanobacteria including Trichodesmium, symbionts of diatoms, and the unicellular cyanobacteria Crocosphaera and UCYN-A. The particles also contained nifH gene sequences of diverse non-cyanobacterial diazotrophs suggesting that particles could be loci for N(2) fixation by heterotrophic bacteria. The results demonstrate that diverse diazotrophs were present on particles and that new N may thereby be directly exported from surface waters on sinking particles. Nature Publishing Group UK 2018-08-16 2019-01 /pmc/articles/PMC6299005/ /pubmed/30116043 http://dx.doi.org/10.1038/s41396-018-0259-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Farnelid, Hanna Turk-Kubo, Kendra Ploug, Helle Ossolinski, Justin E. Collins, James R. Van Mooy, Benjamin A. S. Zehr, Jonathan P. Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title | Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title_full | Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title_fullStr | Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title_full_unstemmed | Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title_short | Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre |
title_sort | diverse diazotrophs are present on sinking particles in the north pacific subtropical gyre |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6299005/ https://www.ncbi.nlm.nih.gov/pubmed/30116043 http://dx.doi.org/10.1038/s41396-018-0259-x |
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