Cargando…
The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744
Expansins are a superfamily of proteins mainly present in plants that are also found in bacteria, fungi and amoebozoa. Expansin proteins bind the plant cells wall and relax the cellulose microfibrils without any enzymatic action. The evolution of this kind of proteins exposes a complex pattern of ho...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6300095/ https://www.ncbi.nlm.nih.gov/pubmed/30574264 http://dx.doi.org/10.1080/19420889.2018.1539612 |
_version_ | 1783381622446358528 |
---|---|
author | Armijos-Jaramillo, Vinicio Santander-Gordón, Daniela Tejera, Eduardo Perez-Castillo, Yunierkis |
author_facet | Armijos-Jaramillo, Vinicio Santander-Gordón, Daniela Tejera, Eduardo Perez-Castillo, Yunierkis |
author_sort | Armijos-Jaramillo, Vinicio |
collection | PubMed |
description | Expansins are a superfamily of proteins mainly present in plants that are also found in bacteria, fungi and amoebozoa. Expansin proteins bind the plant cells wall and relax the cellulose microfibrils without any enzymatic action. The evolution of this kind of proteins exposes a complex pattern of horizontal gene transferences that makes difficult to determine the precise origin of non-plant expansins. We performed a genome-wide search of inter-domain horizontal gene transfer events using Streptomyces species and found a plant-like expansin in the Streptomyces acidiscabies proteome. This finding leads us to study in deep the origin and the characteristics of this peculiar protein, also present in the species Kutzneria sp.744. Using phylogenetic analyses, we determine that indeed S. acidiscabies and Kutzneria sp.744 expansins are located inside the plants expansins A clade. Using secondary and tertiary structural information, we observed that the electrostatic potentials and the folding of expansins are similar, independently of the proteins’ origin. Using all this information, we conclude that S. acidiscabies and Kutzneria sp.744 expansins have a plant origin but differ from plant and bacterial canonical expansins. This finding suggests that the experimental research around this kind of expansins can be promissory in the future. |
format | Online Article Text |
id | pubmed-6300095 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-63000952018-12-20 The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 Armijos-Jaramillo, Vinicio Santander-Gordón, Daniela Tejera, Eduardo Perez-Castillo, Yunierkis Commun Integr Biol Research Paper Expansins are a superfamily of proteins mainly present in plants that are also found in bacteria, fungi and amoebozoa. Expansin proteins bind the plant cells wall and relax the cellulose microfibrils without any enzymatic action. The evolution of this kind of proteins exposes a complex pattern of horizontal gene transferences that makes difficult to determine the precise origin of non-plant expansins. We performed a genome-wide search of inter-domain horizontal gene transfer events using Streptomyces species and found a plant-like expansin in the Streptomyces acidiscabies proteome. This finding leads us to study in deep the origin and the characteristics of this peculiar protein, also present in the species Kutzneria sp.744. Using phylogenetic analyses, we determine that indeed S. acidiscabies and Kutzneria sp.744 expansins are located inside the plants expansins A clade. Using secondary and tertiary structural information, we observed that the electrostatic potentials and the folding of expansins are similar, independently of the proteins’ origin. Using all this information, we conclude that S. acidiscabies and Kutzneria sp.744 expansins have a plant origin but differ from plant and bacterial canonical expansins. This finding suggests that the experimental research around this kind of expansins can be promissory in the future. Taylor & Francis 2018-11-04 /pmc/articles/PMC6300095/ /pubmed/30574264 http://dx.doi.org/10.1080/19420889.2018.1539612 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Armijos-Jaramillo, Vinicio Santander-Gordón, Daniela Tejera, Eduardo Perez-Castillo, Yunierkis The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title | The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title_full | The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title_fullStr | The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title_full_unstemmed | The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title_short | The dilemma of bacterial expansins evolution. The unusual case of Streptomyces acidiscabies and Kutzneria sp. 744 |
title_sort | dilemma of bacterial expansins evolution. the unusual case of streptomyces acidiscabies and kutzneria sp. 744 |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6300095/ https://www.ncbi.nlm.nih.gov/pubmed/30574264 http://dx.doi.org/10.1080/19420889.2018.1539612 |
work_keys_str_mv | AT armijosjaramillovinicio thedilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT santandergordondaniela thedilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT tejeraeduardo thedilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT perezcastilloyunierkis thedilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT armijosjaramillovinicio dilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT santandergordondaniela dilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT tejeraeduardo dilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 AT perezcastilloyunierkis dilemmaofbacterialexpansinsevolutiontheunusualcaseofstreptomycesacidiscabiesandkutzneriasp744 |