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Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?

Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties...

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Autores principales: Bortolini, Sara, Giordani, Giorgia, Tuccia, Fabiola, Maistrello, Lara, Vanin, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301277/
https://www.ncbi.nlm.nih.gov/pubmed/30588393
http://dx.doi.org/10.7717/peerj.5962
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author Bortolini, Sara
Giordani, Giorgia
Tuccia, Fabiola
Maistrello, Lara
Vanin, Stefano
author_facet Bortolini, Sara
Giordani, Giorgia
Tuccia, Fabiola
Maistrello, Lara
Vanin, Stefano
author_sort Bortolini, Sara
collection PubMed
description Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1α, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue.
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spelling pubmed-63012772018-12-26 Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species? Bortolini, Sara Giordani, Giorgia Tuccia, Fabiola Maistrello, Lara Vanin, Stefano PeerJ Entomology Species identification is a crucial step in forensic entomology. In several cases the calculation of the larval age allows the estimation of the minimum Post-Mortem Interval (mPMI). A correct identification of the species is the first step for a correct mPMI estimation. To overcome the difficulties due to the morphological identification especially of the immature stages, a molecular approach can be applied. However, difficulties in separation of closely related species are still an unsolved problem. Sequences of 4 different genes (COI, ND5, EF-1α, PER) of 13 different fly species collected during forensic experiments (Calliphora vicina, Calliphora vomitoria, Lucilia sericata, Lucilia illustris, Lucilia caesar, Chrysomya albiceps, Phormia regina, Cynomya mortuorum, Sarcophaga sp., Hydrotaea sp., Fannia scalaris, Piophila sp., Megaselia scalaris) were evaluated for their capability to identify correctly the species. Three concatenated sequences were obtained combining the four genes in order to verify if longer sequences increase the probability of a correct identification. The obtained results showed that this rule does not work for the species L. caesar and L. illustris. Future works on other DNA regions are suggested to solve this taxonomic issue. PeerJ Inc. 2018-12-17 /pmc/articles/PMC6301277/ /pubmed/30588393 http://dx.doi.org/10.7717/peerj.5962 Text en ©2018 Bortolini et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Entomology
Bortolini, Sara
Giordani, Giorgia
Tuccia, Fabiola
Maistrello, Lara
Vanin, Stefano
Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title_full Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title_fullStr Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title_full_unstemmed Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title_short Do longer sequences improve the accuracy of identification of forensically important Calliphoridae species?
title_sort do longer sequences improve the accuracy of identification of forensically important calliphoridae species?
topic Entomology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301277/
https://www.ncbi.nlm.nih.gov/pubmed/30588393
http://dx.doi.org/10.7717/peerj.5962
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