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Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes

Sorghum (Sorghum bicolor) is an important bioenergy crop. Its biomass mainly consists of the cellulosic and non-cellulosic polysaccharides, both which can be converted to biofuels. The biosynthesis of non-cellulosic polysaccharides involves several glycosyltransferases (GT) families including GT47....

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Autores principales: Xu, Hua, Ding, Anming, Chen, Sihui, Marowa, Prince, Wang, Dian, Chen, Min, Hu, Ruibo, Kong, Yingzhen, O’Neill, Malcolm, Chai, Guohua, Zhou, Gongke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6302003/
https://www.ncbi.nlm.nih.gov/pubmed/30619385
http://dx.doi.org/10.3389/fpls.2018.01773
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author Xu, Hua
Ding, Anming
Chen, Sihui
Marowa, Prince
Wang, Dian
Chen, Min
Hu, Ruibo
Kong, Yingzhen
O’Neill, Malcolm
Chai, Guohua
Zhou, Gongke
author_facet Xu, Hua
Ding, Anming
Chen, Sihui
Marowa, Prince
Wang, Dian
Chen, Min
Hu, Ruibo
Kong, Yingzhen
O’Neill, Malcolm
Chai, Guohua
Zhou, Gongke
author_sort Xu, Hua
collection PubMed
description Sorghum (Sorghum bicolor) is an important bioenergy crop. Its biomass mainly consists of the cellulosic and non-cellulosic polysaccharides, both which can be converted to biofuels. The biosynthesis of non-cellulosic polysaccharides involves several glycosyltransferases (GT) families including GT47. However, there was no systemic study on GT47 family in sorghum to date. Here, we identified 39 sorghum GT47 family members and showed the functional divergences of MURUS3 (MUR3) homologs. Sorghum GT47 proteins were phylogenetically clustered into four distinct subfamilies. Within each subfamily, gene structure was relatively conserved between the members. Ten gene pairs were identified from the 39 GT47 genes, of which two pairs might be originated from tandem duplication. 25.6% (10/39) of sorghum GT47 genes were homologous to Arabidopsis MUR3, a xyloglucan biosynthesis gene in primary cell walls. SbGT47_2, SbGT47_7, and SbGT47_8, three most homologous genes of MUR3, exhibited different tissue expression patterns and were selected for complementation into Arabidopsis mur3-3. Physiological and cell wall analyses showed that SbGT47_2 and SbGT47_7 may be two functional xyloglucan galactosyltransferases in sorghum. Further studies found that MUR3-like genes are widely present in the seed plants but not in the chlorophytic alga Chlamydomonas reinhardtii. Our results provide novel information for evolutionary analysis and functional dissection of sorghum GT47 family members.
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spelling pubmed-63020032019-01-07 Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes Xu, Hua Ding, Anming Chen, Sihui Marowa, Prince Wang, Dian Chen, Min Hu, Ruibo Kong, Yingzhen O’Neill, Malcolm Chai, Guohua Zhou, Gongke Front Plant Sci Plant Science Sorghum (Sorghum bicolor) is an important bioenergy crop. Its biomass mainly consists of the cellulosic and non-cellulosic polysaccharides, both which can be converted to biofuels. The biosynthesis of non-cellulosic polysaccharides involves several glycosyltransferases (GT) families including GT47. However, there was no systemic study on GT47 family in sorghum to date. Here, we identified 39 sorghum GT47 family members and showed the functional divergences of MURUS3 (MUR3) homologs. Sorghum GT47 proteins were phylogenetically clustered into four distinct subfamilies. Within each subfamily, gene structure was relatively conserved between the members. Ten gene pairs were identified from the 39 GT47 genes, of which two pairs might be originated from tandem duplication. 25.6% (10/39) of sorghum GT47 genes were homologous to Arabidopsis MUR3, a xyloglucan biosynthesis gene in primary cell walls. SbGT47_2, SbGT47_7, and SbGT47_8, three most homologous genes of MUR3, exhibited different tissue expression patterns and were selected for complementation into Arabidopsis mur3-3. Physiological and cell wall analyses showed that SbGT47_2 and SbGT47_7 may be two functional xyloglucan galactosyltransferases in sorghum. Further studies found that MUR3-like genes are widely present in the seed plants but not in the chlorophytic alga Chlamydomonas reinhardtii. Our results provide novel information for evolutionary analysis and functional dissection of sorghum GT47 family members. Frontiers Media S.A. 2018-12-14 /pmc/articles/PMC6302003/ /pubmed/30619385 http://dx.doi.org/10.3389/fpls.2018.01773 Text en Copyright © 2018 Xu, Ding, Chen, Marowa, Wang, Chen, Hu, Kong, O’Neill, Chai and Zhou. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Xu, Hua
Ding, Anming
Chen, Sihui
Marowa, Prince
Wang, Dian
Chen, Min
Hu, Ruibo
Kong, Yingzhen
O’Neill, Malcolm
Chai, Guohua
Zhou, Gongke
Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title_full Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title_fullStr Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title_full_unstemmed Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title_short Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes
title_sort genome-wide analysis of sorghum gt47 family reveals functional divergences of mur3-like genes
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6302003/
https://www.ncbi.nlm.nih.gov/pubmed/30619385
http://dx.doi.org/10.3389/fpls.2018.01773
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