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Ab initio phasing of the diffraction of crystals with translational disorder

To date X-ray protein crystallography is the most successful technique available for the determination of high-resolution 3D structures of biological molecules and their complexes. In X-ray protein crystallography the structure of a protein is refined against the set of observed Bragg reflections fr...

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Autores principales: Morgan, Andrew J., Ayyer, Kartik, Barty, Anton, Chen, Joe P. J., Ekeberg, Tomas, Oberthuer, Dominik, White, Thomas A., Yefanov, Oleksandr, Chapman, Henry N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6302929/
https://www.ncbi.nlm.nih.gov/pubmed/30575581
http://dx.doi.org/10.1107/S2053273318015395
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author Morgan, Andrew J.
Ayyer, Kartik
Barty, Anton
Chen, Joe P. J.
Ekeberg, Tomas
Oberthuer, Dominik
White, Thomas A.
Yefanov, Oleksandr
Chapman, Henry N.
author_facet Morgan, Andrew J.
Ayyer, Kartik
Barty, Anton
Chen, Joe P. J.
Ekeberg, Tomas
Oberthuer, Dominik
White, Thomas A.
Yefanov, Oleksandr
Chapman, Henry N.
author_sort Morgan, Andrew J.
collection PubMed
description To date X-ray protein crystallography is the most successful technique available for the determination of high-resolution 3D structures of biological molecules and their complexes. In X-ray protein crystallography the structure of a protein is refined against the set of observed Bragg reflections from a protein crystal. The resolution of the refined protein structure is limited by the highest angle at which Bragg reflections can be observed. In addition, the Bragg reflections alone are typically insufficient (by a factor of two) to determine the structure ab initio, and so prior information is required. Crystals formed from an imperfect packing of the protein molecules may also exhibit continuous diffraction between and beyond these Bragg reflections. When this is due to random displacements of the molecules from each crystal lattice site, the continuous diffraction provides the necessary information to determine the protein structure without prior knowledge, to a resolution that is not limited by the angular extent of the observed Bragg reflections but instead by that of the diffraction as a whole. This article presents an iterative projection algorithm that simultaneously uses the continuous diffraction as well as the Bragg reflections for the determination of protein structures. The viability of this method is demonstrated on simulated crystal diffraction.
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spelling pubmed-63029292019-01-14 Ab initio phasing of the diffraction of crystals with translational disorder Morgan, Andrew J. Ayyer, Kartik Barty, Anton Chen, Joe P. J. Ekeberg, Tomas Oberthuer, Dominik White, Thomas A. Yefanov, Oleksandr Chapman, Henry N. Acta Crystallogr A Found Adv Research Papers To date X-ray protein crystallography is the most successful technique available for the determination of high-resolution 3D structures of biological molecules and their complexes. In X-ray protein crystallography the structure of a protein is refined against the set of observed Bragg reflections from a protein crystal. The resolution of the refined protein structure is limited by the highest angle at which Bragg reflections can be observed. In addition, the Bragg reflections alone are typically insufficient (by a factor of two) to determine the structure ab initio, and so prior information is required. Crystals formed from an imperfect packing of the protein molecules may also exhibit continuous diffraction between and beyond these Bragg reflections. When this is due to random displacements of the molecules from each crystal lattice site, the continuous diffraction provides the necessary information to determine the protein structure without prior knowledge, to a resolution that is not limited by the angular extent of the observed Bragg reflections but instead by that of the diffraction as a whole. This article presents an iterative projection algorithm that simultaneously uses the continuous diffraction as well as the Bragg reflections for the determination of protein structures. The viability of this method is demonstrated on simulated crystal diffraction. International Union of Crystallography 2019-01-01 /pmc/articles/PMC6302929/ /pubmed/30575581 http://dx.doi.org/10.1107/S2053273318015395 Text en © Andrew J. Morgan et al. 2019 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Morgan, Andrew J.
Ayyer, Kartik
Barty, Anton
Chen, Joe P. J.
Ekeberg, Tomas
Oberthuer, Dominik
White, Thomas A.
Yefanov, Oleksandr
Chapman, Henry N.
Ab initio phasing of the diffraction of crystals with translational disorder
title Ab initio phasing of the diffraction of crystals with translational disorder
title_full Ab initio phasing of the diffraction of crystals with translational disorder
title_fullStr Ab initio phasing of the diffraction of crystals with translational disorder
title_full_unstemmed Ab initio phasing of the diffraction of crystals with translational disorder
title_short Ab initio phasing of the diffraction of crystals with translational disorder
title_sort ab initio phasing of the diffraction of crystals with translational disorder
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6302929/
https://www.ncbi.nlm.nih.gov/pubmed/30575581
http://dx.doi.org/10.1107/S2053273318015395
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