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Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)

PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the pr...

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Autores principales: Zhang, Ai‐Li, Gao, Ya‐Fang, Li, Guo‐Dong, Qian, Zi‐Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303153/
https://www.ncbi.nlm.nih.gov/pubmed/30598857
http://dx.doi.org/10.1002/aps3.1199
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author Zhang, Ai‐Li
Gao, Ya‐Fang
Li, Guo‐Dong
Qian, Zi‐Gang
author_facet Zhang, Ai‐Li
Gao, Ya‐Fang
Li, Guo‐Dong
Qian, Zi‐Gang
author_sort Zhang, Ai‐Li
collection PubMed
description PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the protection and management of P. tunicoides. In this study, we develop simple sequence repeat markers of P. tunicoides to analyze population diversity. METHODS AND RESULTS: Microsatellite loci of P. tunicoides were isolated with FIASCO. Eleven polymorphic and 10 monomorphic primers were developed. The 11 polymorphic primers were tested in three P. tunicoides populations, yielding two to nine alleles per locus. Levels of observed heterozygosity varied from 0.000 to 1.000, and levels of expected heterozygosity ranged from 0.000 to 0.615. In addition, three of these loci were successfully amplified, and showed polymorphism, in three Silene species. CONCLUSIONS: These microsatellite markers can be valuable tools to investigate the genetic diversity and population structure of P. tunicoides.
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spelling pubmed-63031532018-12-31 Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) Zhang, Ai‐Li Gao, Ya‐Fang Li, Guo‐Dong Qian, Zi‐Gang Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the protection and management of P. tunicoides. In this study, we develop simple sequence repeat markers of P. tunicoides to analyze population diversity. METHODS AND RESULTS: Microsatellite loci of P. tunicoides were isolated with FIASCO. Eleven polymorphic and 10 monomorphic primers were developed. The 11 polymorphic primers were tested in three P. tunicoides populations, yielding two to nine alleles per locus. Levels of observed heterozygosity varied from 0.000 to 1.000, and levels of expected heterozygosity ranged from 0.000 to 0.615. In addition, three of these loci were successfully amplified, and showed polymorphism, in three Silene species. CONCLUSIONS: These microsatellite markers can be valuable tools to investigate the genetic diversity and population structure of P. tunicoides. John Wiley and Sons Inc. 2018-12-04 /pmc/articles/PMC6303153/ /pubmed/30598857 http://dx.doi.org/10.1002/aps3.1199 Text en © 2018 Li et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Primer Notes
Zhang, Ai‐Li
Gao, Ya‐Fang
Li, Guo‐Dong
Qian, Zi‐Gang
Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title_full Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title_fullStr Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title_full_unstemmed Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title_short Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
title_sort development, characterization, and cross‐amplification of microsatellite markers for psammosilene tunicoides (caryophyllaceae)
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303153/
https://www.ncbi.nlm.nih.gov/pubmed/30598857
http://dx.doi.org/10.1002/aps3.1199
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