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Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae)
PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the pr...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303153/ https://www.ncbi.nlm.nih.gov/pubmed/30598857 http://dx.doi.org/10.1002/aps3.1199 |
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author | Zhang, Ai‐Li Gao, Ya‐Fang Li, Guo‐Dong Qian, Zi‐Gang |
author_facet | Zhang, Ai‐Li Gao, Ya‐Fang Li, Guo‐Dong Qian, Zi‐Gang |
author_sort | Zhang, Ai‐Li |
collection | PubMed |
description | PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the protection and management of P. tunicoides. In this study, we develop simple sequence repeat markers of P. tunicoides to analyze population diversity. METHODS AND RESULTS: Microsatellite loci of P. tunicoides were isolated with FIASCO. Eleven polymorphic and 10 monomorphic primers were developed. The 11 polymorphic primers were tested in three P. tunicoides populations, yielding two to nine alleles per locus. Levels of observed heterozygosity varied from 0.000 to 1.000, and levels of expected heterozygosity ranged from 0.000 to 0.615. In addition, three of these loci were successfully amplified, and showed polymorphism, in three Silene species. CONCLUSIONS: These microsatellite markers can be valuable tools to investigate the genetic diversity and population structure of P. tunicoides. |
format | Online Article Text |
id | pubmed-6303153 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63031532018-12-31 Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) Zhang, Ai‐Li Gao, Ya‐Fang Li, Guo‐Dong Qian, Zi‐Gang Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Psammosilene tunicoides (Caryophyllaceae) is a narrowly distributed and endemic plant species in southwestern China. The overexploitation of natural P. tunicoides has led to the destruction of many populations. Population and genetic studies will provide crucial data for the protection and management of P. tunicoides. In this study, we develop simple sequence repeat markers of P. tunicoides to analyze population diversity. METHODS AND RESULTS: Microsatellite loci of P. tunicoides were isolated with FIASCO. Eleven polymorphic and 10 monomorphic primers were developed. The 11 polymorphic primers were tested in three P. tunicoides populations, yielding two to nine alleles per locus. Levels of observed heterozygosity varied from 0.000 to 1.000, and levels of expected heterozygosity ranged from 0.000 to 0.615. In addition, three of these loci were successfully amplified, and showed polymorphism, in three Silene species. CONCLUSIONS: These microsatellite markers can be valuable tools to investigate the genetic diversity and population structure of P. tunicoides. John Wiley and Sons Inc. 2018-12-04 /pmc/articles/PMC6303153/ /pubmed/30598857 http://dx.doi.org/10.1002/aps3.1199 Text en © 2018 Li et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Zhang, Ai‐Li Gao, Ya‐Fang Li, Guo‐Dong Qian, Zi‐Gang Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title | Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title_full | Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title_fullStr | Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title_full_unstemmed | Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title_short | Development, characterization, and cross‐amplification of microsatellite markers for Psammosilene tunicoides (Caryophyllaceae) |
title_sort | development, characterization, and cross‐amplification of microsatellite markers for psammosilene tunicoides (caryophyllaceae) |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303153/ https://www.ncbi.nlm.nih.gov/pubmed/30598857 http://dx.doi.org/10.1002/aps3.1199 |
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