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Reusable building blocks in biological systems
One of the most widely recognized features of biological systems is their modularity. The modules that constitute biological systems are said to be redeployed and combined across several conditions, thus acting as building blocks. In this work, we analyse to what extent are these building blocks reu...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303794/ https://www.ncbi.nlm.nih.gov/pubmed/30958230 http://dx.doi.org/10.1098/rsif.2018.0595 |
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author | Mireles, Victor Conrad, Tim O. F. |
author_facet | Mireles, Victor Conrad, Tim O. F. |
author_sort | Mireles, Victor |
collection | PubMed |
description | One of the most widely recognized features of biological systems is their modularity. The modules that constitute biological systems are said to be redeployed and combined across several conditions, thus acting as building blocks. In this work, we analyse to what extent are these building blocks reusable as compared with those found in randomized versions of a system. We develop a notion of decompositions of systems into phenotypic building blocks, which allows them to overlap while maximizing the number of times a building block is reused across several conditions. Different biological systems present building blocks whose reusability ranges from single use (e.g. condition specific) to constitutive, although their average reusability is not always higher than random equivalents of the system. These decompositions reveal a distinct distribution of building block sizes in real biological systems. This distribution stems, in part, from the peculiar usage pattern of the elements of biological systems, and constitutes a new angle to study the evolution of modularity. |
format | Online Article Text |
id | pubmed-6303794 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-63037942018-12-26 Reusable building blocks in biological systems Mireles, Victor Conrad, Tim O. F. J R Soc Interface Life Sciences–Mathematics interface One of the most widely recognized features of biological systems is their modularity. The modules that constitute biological systems are said to be redeployed and combined across several conditions, thus acting as building blocks. In this work, we analyse to what extent are these building blocks reusable as compared with those found in randomized versions of a system. We develop a notion of decompositions of systems into phenotypic building blocks, which allows them to overlap while maximizing the number of times a building block is reused across several conditions. Different biological systems present building blocks whose reusability ranges from single use (e.g. condition specific) to constitutive, although their average reusability is not always higher than random equivalents of the system. These decompositions reveal a distinct distribution of building block sizes in real biological systems. This distribution stems, in part, from the peculiar usage pattern of the elements of biological systems, and constitutes a new angle to study the evolution of modularity. The Royal Society 2018-12 2018-12-19 /pmc/articles/PMC6303794/ /pubmed/30958230 http://dx.doi.org/10.1098/rsif.2018.0595 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Mireles, Victor Conrad, Tim O. F. Reusable building blocks in biological systems |
title | Reusable building blocks in biological systems |
title_full | Reusable building blocks in biological systems |
title_fullStr | Reusable building blocks in biological systems |
title_full_unstemmed | Reusable building blocks in biological systems |
title_short | Reusable building blocks in biological systems |
title_sort | reusable building blocks in biological systems |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303794/ https://www.ncbi.nlm.nih.gov/pubmed/30958230 http://dx.doi.org/10.1098/rsif.2018.0595 |
work_keys_str_mv | AT mirelesvictor reusablebuildingblocksinbiologicalsystems AT conradtimof reusablebuildingblocksinbiologicalsystems |