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Genome of Tenualosa ilisha from the river Padma, Bangladesh
OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenua...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303923/ https://www.ncbi.nlm.nih.gov/pubmed/30577879 http://dx.doi.org/10.1186/s13104-018-4028-8 |
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author | Das, Avizit Ianakiev, Peter Baten, Abdul Nehleen, Rifath Ehsan, Tasneem Ahmed, Oly Islam, Mohammad Riazul Naser, M. Niamul Marma, Mong Sano Khan, Haseena |
author_facet | Das, Avizit Ianakiev, Peter Baten, Abdul Nehleen, Rifath Ehsan, Tasneem Ahmed, Oly Islam, Mohammad Riazul Naser, M. Niamul Marma, Mong Sano Khan, Haseena |
author_sort | Das, Avizit |
collection | PubMed |
description | OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome. |
format | Online Article Text |
id | pubmed-6303923 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-63039232018-12-31 Genome of Tenualosa ilisha from the river Padma, Bangladesh Das, Avizit Ianakiev, Peter Baten, Abdul Nehleen, Rifath Ehsan, Tasneem Ahmed, Oly Islam, Mohammad Riazul Naser, M. Niamul Marma, Mong Sano Khan, Haseena BMC Res Notes Data Note OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome. BioMed Central 2018-12-22 /pmc/articles/PMC6303923/ /pubmed/30577879 http://dx.doi.org/10.1186/s13104-018-4028-8 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Data Note Das, Avizit Ianakiev, Peter Baten, Abdul Nehleen, Rifath Ehsan, Tasneem Ahmed, Oly Islam, Mohammad Riazul Naser, M. Niamul Marma, Mong Sano Khan, Haseena Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title_full | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title_fullStr | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title_full_unstemmed | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title_short | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
title_sort | genome of tenualosa ilisha from the river padma, bangladesh |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303923/ https://www.ncbi.nlm.nih.gov/pubmed/30577879 http://dx.doi.org/10.1186/s13104-018-4028-8 |
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