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Genome of Tenualosa ilisha from the river Padma, Bangladesh

OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenua...

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Autores principales: Das, Avizit, Ianakiev, Peter, Baten, Abdul, Nehleen, Rifath, Ehsan, Tasneem, Ahmed, Oly, Islam, Mohammad Riazul, Naser, M. Niamul, Marma, Mong Sano, Khan, Haseena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303923/
https://www.ncbi.nlm.nih.gov/pubmed/30577879
http://dx.doi.org/10.1186/s13104-018-4028-8
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author Das, Avizit
Ianakiev, Peter
Baten, Abdul
Nehleen, Rifath
Ehsan, Tasneem
Ahmed, Oly
Islam, Mohammad Riazul
Naser, M. Niamul
Marma, Mong Sano
Khan, Haseena
author_facet Das, Avizit
Ianakiev, Peter
Baten, Abdul
Nehleen, Rifath
Ehsan, Tasneem
Ahmed, Oly
Islam, Mohammad Riazul
Naser, M. Niamul
Marma, Mong Sano
Khan, Haseena
author_sort Das, Avizit
collection PubMed
description OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome.
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spelling pubmed-63039232018-12-31 Genome of Tenualosa ilisha from the river Padma, Bangladesh Das, Avizit Ianakiev, Peter Baten, Abdul Nehleen, Rifath Ehsan, Tasneem Ahmed, Oly Islam, Mohammad Riazul Naser, M. Niamul Marma, Mong Sano Khan, Haseena BMC Res Notes Data Note OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome. BioMed Central 2018-12-22 /pmc/articles/PMC6303923/ /pubmed/30577879 http://dx.doi.org/10.1186/s13104-018-4028-8 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Das, Avizit
Ianakiev, Peter
Baten, Abdul
Nehleen, Rifath
Ehsan, Tasneem
Ahmed, Oly
Islam, Mohammad Riazul
Naser, M. Niamul
Marma, Mong Sano
Khan, Haseena
Genome of Tenualosa ilisha from the river Padma, Bangladesh
title Genome of Tenualosa ilisha from the river Padma, Bangladesh
title_full Genome of Tenualosa ilisha from the river Padma, Bangladesh
title_fullStr Genome of Tenualosa ilisha from the river Padma, Bangladesh
title_full_unstemmed Genome of Tenualosa ilisha from the river Padma, Bangladesh
title_short Genome of Tenualosa ilisha from the river Padma, Bangladesh
title_sort genome of tenualosa ilisha from the river padma, bangladesh
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303923/
https://www.ncbi.nlm.nih.gov/pubmed/30577879
http://dx.doi.org/10.1186/s13104-018-4028-8
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