Cargando…
Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6305119/ https://www.ncbi.nlm.nih.gov/pubmed/30595984 http://dx.doi.org/10.7717/peerj.6131 |
_version_ | 1783382493365272576 |
---|---|
author | Du, Shiyu Niu, Gengyun Nyman, Tommi Wei, Meicai |
author_facet | Du, Shiyu Niu, Gengyun Nyman, Tommi Wei, Meicai |
author_sort | Du, Shiyu |
collection | PubMed |
description | We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW-trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea. |
format | Online Article Text |
id | pubmed-6305119 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63051192018-12-28 Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) Du, Shiyu Niu, Gengyun Nyman, Tommi Wei, Meicai PeerJ Entomology We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW-trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea. PeerJ Inc. 2018-12-21 /pmc/articles/PMC6305119/ /pubmed/30595984 http://dx.doi.org/10.7717/peerj.6131 Text en ©2018 Du et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Entomology Du, Shiyu Niu, Gengyun Nyman, Tommi Wei, Meicai Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title | Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title_full | Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title_fullStr | Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title_full_unstemmed | Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title_short | Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae) |
title_sort | characterization of the mitochondrial genome of arge bella wei & du sp. nov. (hymenoptera: argidae) |
topic | Entomology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6305119/ https://www.ncbi.nlm.nih.gov/pubmed/30595984 http://dx.doi.org/10.7717/peerj.6131 |
work_keys_str_mv | AT dushiyu characterizationofthemitochondrialgenomeofargebellaweiduspnovhymenopteraargidae AT niugengyun characterizationofthemitochondrialgenomeofargebellaweiduspnovhymenopteraargidae AT nymantommi characterizationofthemitochondrialgenomeofargebellaweiduspnovhymenopteraargidae AT weimeicai characterizationofthemitochondrialgenomeofargebellaweiduspnovhymenopteraargidae |