Cargando…

The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia

Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established...

Descripción completa

Detalles Bibliográficos
Autores principales: Cancian de Araujo, Bruno, Schmidt, Stefan, Schmidt, Olga, von Rintelen, Thomas, Ubaidillah, Rosichon, Balke, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306476/
https://www.ncbi.nlm.nih.gov/pubmed/30598619
http://dx.doi.org/10.3897/BDJ.6.e29927
_version_ 1783382790639714304
author Cancian de Araujo, Bruno
Schmidt, Stefan
Schmidt, Olga
von Rintelen, Thomas
Ubaidillah, Rosichon
Balke, Michael
author_facet Cancian de Araujo, Bruno
Schmidt, Stefan
Schmidt, Olga
von Rintelen, Thomas
Ubaidillah, Rosichon
Balke, Michael
author_sort Cancian de Araujo, Bruno
collection PubMed
description Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established as a biodiversity information system aiming at, amongst other goals, creating inventories of the Indonesian entomofauna using DNA barcoding. Here, we release the first large scale assessment of the megadiverse insect groups that occur in the Mount Halimun-Salak National Park, one of the largest tropical rain-forest ecosystem in West Java, with a focus on Hymenoptera, Coleoptera, Diptera and Lepidoptera collected with Malaise traps. From September 2015 until April 2016, 34 Malaise traps were placed in different localities in the south-eastern part of the Halimun-Salak National Park. A total of 4,531 specimens were processed for DNA barcoding and in total, 2,382 individuals produced barcode compliant records, representing 1,195 exclusive BINs or putative species in 98 insect families. A total of 1,149 BINs were new to BOLD. Of 1,195 BINs detected, 804 BINs were singletons and more than 90% of the BINs incorporated less than five specimens. The astonishing heterogeneity of BINs, as high as 1.1 exclusive BIN per specimen of Diptera successfully processed, shows that the cost/benefit relationship of the discovery of new species in those areas is very low. In four genera of Chalcidoidea, a superfamily of the Hymenoptera, the number of discovered species was higher than the number of species known from Indonesia, suggesting that our samples contain many species that are new to science. Those numbers shows how fast molecular pipelines contribute substantially to the objective inventorying of the fauna giving us a good picture of how potentially diverse tropical areas might be.
format Online
Article
Text
id pubmed-6306476
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Pensoft Publishers
record_format MEDLINE/PubMed
spelling pubmed-63064762018-12-31 The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia Cancian de Araujo, Bruno Schmidt, Stefan Schmidt, Olga von Rintelen, Thomas Ubaidillah, Rosichon Balke, Michael Biodivers Data J Research Article Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established as a biodiversity information system aiming at, amongst other goals, creating inventories of the Indonesian entomofauna using DNA barcoding. Here, we release the first large scale assessment of the megadiverse insect groups that occur in the Mount Halimun-Salak National Park, one of the largest tropical rain-forest ecosystem in West Java, with a focus on Hymenoptera, Coleoptera, Diptera and Lepidoptera collected with Malaise traps. From September 2015 until April 2016, 34 Malaise traps were placed in different localities in the south-eastern part of the Halimun-Salak National Park. A total of 4,531 specimens were processed for DNA barcoding and in total, 2,382 individuals produced barcode compliant records, representing 1,195 exclusive BINs or putative species in 98 insect families. A total of 1,149 BINs were new to BOLD. Of 1,195 BINs detected, 804 BINs were singletons and more than 90% of the BINs incorporated less than five specimens. The astonishing heterogeneity of BINs, as high as 1.1 exclusive BIN per specimen of Diptera successfully processed, shows that the cost/benefit relationship of the discovery of new species in those areas is very low. In four genera of Chalcidoidea, a superfamily of the Hymenoptera, the number of discovered species was higher than the number of species known from Indonesia, suggesting that our samples contain many species that are new to science. Those numbers shows how fast molecular pipelines contribute substantially to the objective inventorying of the fauna giving us a good picture of how potentially diverse tropical areas might be. Pensoft Publishers 2018-12-19 /pmc/articles/PMC6306476/ /pubmed/30598619 http://dx.doi.org/10.3897/BDJ.6.e29927 Text en Bruno Cancian de Araujo, Stefan Schmidt, Olga Schmidt, Thomas von Rintelen, Rosichon Ubaidillah, Michael Balke http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cancian de Araujo, Bruno
Schmidt, Stefan
Schmidt, Olga
von Rintelen, Thomas
Ubaidillah, Rosichon
Balke, Michael
The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title_full The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title_fullStr The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title_full_unstemmed The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title_short The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
title_sort mt halimun-salak malaise trap project - releasing the most species rich dna barcode library for indonesia
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306476/
https://www.ncbi.nlm.nih.gov/pubmed/30598619
http://dx.doi.org/10.3897/BDJ.6.e29927
work_keys_str_mv AT canciandearaujobruno themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT schmidtstefan themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT schmidtolga themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT vonrintelenthomas themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT ubaidillahrosichon themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT balkemichael themthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT canciandearaujobruno mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT schmidtstefan mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT schmidtolga mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT vonrintelenthomas mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT ubaidillahrosichon mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia
AT balkemichael mthalimunsalakmalaisetrapprojectreleasingthemostspeciesrichdnabarcodelibraryforindonesia