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The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia
Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306476/ https://www.ncbi.nlm.nih.gov/pubmed/30598619 http://dx.doi.org/10.3897/BDJ.6.e29927 |
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author | Cancian de Araujo, Bruno Schmidt, Stefan Schmidt, Olga von Rintelen, Thomas Ubaidillah, Rosichon Balke, Michael |
author_facet | Cancian de Araujo, Bruno Schmidt, Stefan Schmidt, Olga von Rintelen, Thomas Ubaidillah, Rosichon Balke, Michael |
author_sort | Cancian de Araujo, Bruno |
collection | PubMed |
description | Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established as a biodiversity information system aiming at, amongst other goals, creating inventories of the Indonesian entomofauna using DNA barcoding. Here, we release the first large scale assessment of the megadiverse insect groups that occur in the Mount Halimun-Salak National Park, one of the largest tropical rain-forest ecosystem in West Java, with a focus on Hymenoptera, Coleoptera, Diptera and Lepidoptera collected with Malaise traps. From September 2015 until April 2016, 34 Malaise traps were placed in different localities in the south-eastern part of the Halimun-Salak National Park. A total of 4,531 specimens were processed for DNA barcoding and in total, 2,382 individuals produced barcode compliant records, representing 1,195 exclusive BINs or putative species in 98 insect families. A total of 1,149 BINs were new to BOLD. Of 1,195 BINs detected, 804 BINs were singletons and more than 90% of the BINs incorporated less than five specimens. The astonishing heterogeneity of BINs, as high as 1.1 exclusive BIN per specimen of Diptera successfully processed, shows that the cost/benefit relationship of the discovery of new species in those areas is very low. In four genera of Chalcidoidea, a superfamily of the Hymenoptera, the number of discovered species was higher than the number of species known from Indonesia, suggesting that our samples contain many species that are new to science. Those numbers shows how fast molecular pipelines contribute substantially to the objective inventorying of the fauna giving us a good picture of how potentially diverse tropical areas might be. |
format | Online Article Text |
id | pubmed-6306476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-63064762018-12-31 The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia Cancian de Araujo, Bruno Schmidt, Stefan Schmidt, Olga von Rintelen, Thomas Ubaidillah, Rosichon Balke, Michael Biodivers Data J Research Article Abstract. The Indonesian archipelago features an extraordinarily rich biota. However, the actual taxonomic inventory of the archipelago remains highly incomplete and there is hardly any significant taxonomic activity that utilises recent technological advances. The IndoBioSys project was established as a biodiversity information system aiming at, amongst other goals, creating inventories of the Indonesian entomofauna using DNA barcoding. Here, we release the first large scale assessment of the megadiverse insect groups that occur in the Mount Halimun-Salak National Park, one of the largest tropical rain-forest ecosystem in West Java, with a focus on Hymenoptera, Coleoptera, Diptera and Lepidoptera collected with Malaise traps. From September 2015 until April 2016, 34 Malaise traps were placed in different localities in the south-eastern part of the Halimun-Salak National Park. A total of 4,531 specimens were processed for DNA barcoding and in total, 2,382 individuals produced barcode compliant records, representing 1,195 exclusive BINs or putative species in 98 insect families. A total of 1,149 BINs were new to BOLD. Of 1,195 BINs detected, 804 BINs were singletons and more than 90% of the BINs incorporated less than five specimens. The astonishing heterogeneity of BINs, as high as 1.1 exclusive BIN per specimen of Diptera successfully processed, shows that the cost/benefit relationship of the discovery of new species in those areas is very low. In four genera of Chalcidoidea, a superfamily of the Hymenoptera, the number of discovered species was higher than the number of species known from Indonesia, suggesting that our samples contain many species that are new to science. Those numbers shows how fast molecular pipelines contribute substantially to the objective inventorying of the fauna giving us a good picture of how potentially diverse tropical areas might be. Pensoft Publishers 2018-12-19 /pmc/articles/PMC6306476/ /pubmed/30598619 http://dx.doi.org/10.3897/BDJ.6.e29927 Text en Bruno Cancian de Araujo, Stefan Schmidt, Olga Schmidt, Thomas von Rintelen, Rosichon Ubaidillah, Michael Balke http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Cancian de Araujo, Bruno Schmidt, Stefan Schmidt, Olga von Rintelen, Thomas Ubaidillah, Rosichon Balke, Michael The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title | The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title_full | The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title_fullStr | The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title_full_unstemmed | The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title_short | The Mt Halimun-Salak Malaise Trap project - releasing the most species rich DNA Barcode library for Indonesia |
title_sort | mt halimun-salak malaise trap project - releasing the most species rich dna barcode library for indonesia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306476/ https://www.ncbi.nlm.nih.gov/pubmed/30598619 http://dx.doi.org/10.3897/BDJ.6.e29927 |
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