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Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306493/ https://www.ncbi.nlm.nih.gov/pubmed/30377880 http://dx.doi.org/10.1007/s10827-018-0702-z |
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author | Miłkowski, Marcin Hensel, Witold M. Hohol, Mateusz |
author_facet | Miłkowski, Marcin Hensel, Witold M. Hohol, Mateusz |
author_sort | Miłkowski, Marcin |
collection | PubMed |
description | Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model replications and model reproductions in computational neuroscience. We contend that model replicability, or independent researchers' ability to obtain the same output using original code and data, and model reproducibility, or independent researchers' ability to recreate a model without original code, serve different functions and fail for different reasons. This means that measures designed to improve model replicability may not enhance (and, in some cases, may actually damage) model reproducibility. We claim that although both are undesirable, low model reproducibility poses more of a threat to long-term scientific progress than low model replicability. In our opinion, low model reproducibility stems mostly from authors' omitting to provide crucial information in scientific papers and we stress that sharing all computer code and data is not a solution. Reports of computational studies should remain selective and include all and only relevant bits of code. |
format | Online Article Text |
id | pubmed-6306493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-63064932019-01-04 Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail Miłkowski, Marcin Hensel, Witold M. Hohol, Mateusz J Comput Neurosci Article Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model replications and model reproductions in computational neuroscience. We contend that model replicability, or independent researchers' ability to obtain the same output using original code and data, and model reproducibility, or independent researchers' ability to recreate a model without original code, serve different functions and fail for different reasons. This means that measures designed to improve model replicability may not enhance (and, in some cases, may actually damage) model reproducibility. We claim that although both are undesirable, low model reproducibility poses more of a threat to long-term scientific progress than low model replicability. In our opinion, low model reproducibility stems mostly from authors' omitting to provide crucial information in scientific papers and we stress that sharing all computer code and data is not a solution. Reports of computational studies should remain selective and include all and only relevant bits of code. Springer US 2018-10-31 2018 /pmc/articles/PMC6306493/ /pubmed/30377880 http://dx.doi.org/10.1007/s10827-018-0702-z Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Miłkowski, Marcin Hensel, Witold M. Hohol, Mateusz Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title | Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title_full | Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title_fullStr | Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title_full_unstemmed | Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title_short | Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail |
title_sort | replicability or reproducibility? on the replication crisis in computational neuroscience and sharing only relevant detail |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306493/ https://www.ncbi.nlm.nih.gov/pubmed/30377880 http://dx.doi.org/10.1007/s10827-018-0702-z |
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