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Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail

Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model...

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Detalles Bibliográficos
Autores principales: Miłkowski, Marcin, Hensel, Witold M., Hohol, Mateusz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306493/
https://www.ncbi.nlm.nih.gov/pubmed/30377880
http://dx.doi.org/10.1007/s10827-018-0702-z
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author Miłkowski, Marcin
Hensel, Witold M.
Hohol, Mateusz
author_facet Miłkowski, Marcin
Hensel, Witold M.
Hohol, Mateusz
author_sort Miłkowski, Marcin
collection PubMed
description Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model replications and model reproductions in computational neuroscience. We contend that model replicability, or independent researchers' ability to obtain the same output using original code and data, and model reproducibility, or independent researchers' ability to recreate a model without original code, serve different functions and fail for different reasons. This means that measures designed to improve model replicability may not enhance (and, in some cases, may actually damage) model reproducibility. We claim that although both are undesirable, low model reproducibility poses more of a threat to long-term scientific progress than low model replicability. In our opinion, low model reproducibility stems mostly from authors' omitting to provide crucial information in scientific papers and we stress that sharing all computer code and data is not a solution. Reports of computational studies should remain selective and include all and only relevant bits of code.
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spelling pubmed-63064932019-01-04 Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail Miłkowski, Marcin Hensel, Witold M. Hohol, Mateusz J Comput Neurosci Article Replicability and reproducibility of computational models has been somewhat understudied by “the replication movement.” In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model replications and model reproductions in computational neuroscience. We contend that model replicability, or independent researchers' ability to obtain the same output using original code and data, and model reproducibility, or independent researchers' ability to recreate a model without original code, serve different functions and fail for different reasons. This means that measures designed to improve model replicability may not enhance (and, in some cases, may actually damage) model reproducibility. We claim that although both are undesirable, low model reproducibility poses more of a threat to long-term scientific progress than low model replicability. In our opinion, low model reproducibility stems mostly from authors' omitting to provide crucial information in scientific papers and we stress that sharing all computer code and data is not a solution. Reports of computational studies should remain selective and include all and only relevant bits of code. Springer US 2018-10-31 2018 /pmc/articles/PMC6306493/ /pubmed/30377880 http://dx.doi.org/10.1007/s10827-018-0702-z Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Miłkowski, Marcin
Hensel, Witold M.
Hohol, Mateusz
Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title_full Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title_fullStr Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title_full_unstemmed Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title_short Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail
title_sort replicability or reproducibility? on the replication crisis in computational neuroscience and sharing only relevant detail
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306493/
https://www.ncbi.nlm.nih.gov/pubmed/30377880
http://dx.doi.org/10.1007/s10827-018-0702-z
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