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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics

To address the large gap between time scales that can be easily reached by molecular simulations and those required to understand protein dynamics, we present a rapid self-consistent approximation of the side chain free energy at every integration step. In analogy with the adiabatic Born-Oppenheimer...

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Detalles Bibliográficos
Autores principales: Jumper, John M., Faruk, Nabil F., Freed, Karl F., Sosnick, Tobin R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6307715/
https://www.ncbi.nlm.nih.gov/pubmed/30589846
http://dx.doi.org/10.1371/journal.pcbi.1006342

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