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Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing
Increasing age negatively affects different phases of bone fracture healing. The present study aimed to explore underlying mechanisms related to bone fracture repair in the elderly. GSE17825 public transcriptome data from the Gene Expression Omnibus database were used for analysis. First, raw data w...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311305/ https://www.ncbi.nlm.nih.gov/pubmed/30643820 http://dx.doi.org/10.1155/2018/7530653 |
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author | Zhao, Shu-Jie Kong, Fan-Qi Fan, Jin Chen, Ying Zhou, Shuai Xue, Ming-Xin Yin, Guo-Yong |
author_facet | Zhao, Shu-Jie Kong, Fan-Qi Fan, Jin Chen, Ying Zhou, Shuai Xue, Ming-Xin Yin, Guo-Yong |
author_sort | Zhao, Shu-Jie |
collection | PubMed |
description | Increasing age negatively affects different phases of bone fracture healing. The present study aimed to explore underlying mechanisms related to bone fracture repair in the elderly. GSE17825 public transcriptome data from the Gene Expression Omnibus database were used for analysis. First, raw data were normalized and differentially expressed genes (DEGs) were identified. Next, Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses were implemented to evaluate pathways and DEGs. A protein–protein interaction (PPI) network was then constructed. A total of 726, 861, and 432 DEGs were identified between the young and elderly individuals at 1, 3, and 5 days after fracture, respectively. The results of GO, KEGG, and PPI network analyses suggested that the inflammatory response, Wnt signaling pathway, vascularization-associated processes, and synaptic-related functions of the identified DEGs are markedly enriched, which may account for delayed fracture healing in the elderly. These findings provide valuable clues for investigating the effects of aging on fracture healing but should be validated through further experiments. |
format | Online Article Text |
id | pubmed-6311305 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-63113052019-01-14 Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing Zhao, Shu-Jie Kong, Fan-Qi Fan, Jin Chen, Ying Zhou, Shuai Xue, Ming-Xin Yin, Guo-Yong Biomed Res Int Research Article Increasing age negatively affects different phases of bone fracture healing. The present study aimed to explore underlying mechanisms related to bone fracture repair in the elderly. GSE17825 public transcriptome data from the Gene Expression Omnibus database were used for analysis. First, raw data were normalized and differentially expressed genes (DEGs) were identified. Next, Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses were implemented to evaluate pathways and DEGs. A protein–protein interaction (PPI) network was then constructed. A total of 726, 861, and 432 DEGs were identified between the young and elderly individuals at 1, 3, and 5 days after fracture, respectively. The results of GO, KEGG, and PPI network analyses suggested that the inflammatory response, Wnt signaling pathway, vascularization-associated processes, and synaptic-related functions of the identified DEGs are markedly enriched, which may account for delayed fracture healing in the elderly. These findings provide valuable clues for investigating the effects of aging on fracture healing but should be validated through further experiments. Hindawi 2018-12-16 /pmc/articles/PMC6311305/ /pubmed/30643820 http://dx.doi.org/10.1155/2018/7530653 Text en Copyright © 2018 Shu-Jie Zhao et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhao, Shu-Jie Kong, Fan-Qi Fan, Jin Chen, Ying Zhou, Shuai Xue, Ming-Xin Yin, Guo-Yong Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title | Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title_full | Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title_fullStr | Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title_full_unstemmed | Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title_short | Bioinformatics Analysis of the Molecular Mechanism of Aging on Fracture Healing |
title_sort | bioinformatics analysis of the molecular mechanism of aging on fracture healing |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311305/ https://www.ncbi.nlm.nih.gov/pubmed/30643820 http://dx.doi.org/10.1155/2018/7530653 |
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