Cargando…
Estimating heterogeneous treatment effect by balancing heterogeneity and fitness
BACKGROUND: Estimating heterogeneous treatment effect is a fundamental problem in biological and medical applications. Recently, several recursive partitioning methods have been proposed to identify the subgroups that respond differently towards a treatment, and they rely on a fitness criterion to m...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311929/ https://www.ncbi.nlm.nih.gov/pubmed/30598067 http://dx.doi.org/10.1186/s12859-018-2521-7 |
_version_ | 1783383703721869312 |
---|---|
author | Zhang, Weijia Le, Thuc Duy Liu, Lin Li, Jiuyong |
author_facet | Zhang, Weijia Le, Thuc Duy Liu, Lin Li, Jiuyong |
author_sort | Zhang, Weijia |
collection | PubMed |
description | BACKGROUND: Estimating heterogeneous treatment effect is a fundamental problem in biological and medical applications. Recently, several recursive partitioning methods have been proposed to identify the subgroups that respond differently towards a treatment, and they rely on a fitness criterion to minimize the error between the estimated treatment effects and the unobservable ground truths. RESULTS: In this paper, we propose that a heterogeneity criterion, which maximizes the differences of treatment effects among the subgroups, also needs to be considered. Moreover, we show that better performances can be achieved when the fitness and the heterogeneous criteria are considered simultaneously. Selecting the optimal splitting points then becomes a multi-objective problem; however, a solution that achieves optimal in both aspects are often not available. To solve this problem, we propose a multi-objective splitting procedure to balance both criteria. The proposed procedure is computationally efficient and fits naturally into the existing recursive partitioning framework. Experimental results show that the proposed multi-objective approach performs consistently better than existing ones. CONCLUSION: Heterogeneity should be considered with fitness in heterogeneous treatment effect estimation, and the proposed multi-objective splitting procedure achieves the best performance by balancing both criteria. |
format | Online Article Text |
id | pubmed-6311929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-63119292019-01-07 Estimating heterogeneous treatment effect by balancing heterogeneity and fitness Zhang, Weijia Le, Thuc Duy Liu, Lin Li, Jiuyong BMC Bioinformatics Research BACKGROUND: Estimating heterogeneous treatment effect is a fundamental problem in biological and medical applications. Recently, several recursive partitioning methods have been proposed to identify the subgroups that respond differently towards a treatment, and they rely on a fitness criterion to minimize the error between the estimated treatment effects and the unobservable ground truths. RESULTS: In this paper, we propose that a heterogeneity criterion, which maximizes the differences of treatment effects among the subgroups, also needs to be considered. Moreover, we show that better performances can be achieved when the fitness and the heterogeneous criteria are considered simultaneously. Selecting the optimal splitting points then becomes a multi-objective problem; however, a solution that achieves optimal in both aspects are often not available. To solve this problem, we propose a multi-objective splitting procedure to balance both criteria. The proposed procedure is computationally efficient and fits naturally into the existing recursive partitioning framework. Experimental results show that the proposed multi-objective approach performs consistently better than existing ones. CONCLUSION: Heterogeneity should be considered with fitness in heterogeneous treatment effect estimation, and the proposed multi-objective splitting procedure achieves the best performance by balancing both criteria. BioMed Central 2018-12-31 /pmc/articles/PMC6311929/ /pubmed/30598067 http://dx.doi.org/10.1186/s12859-018-2521-7 Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Zhang, Weijia Le, Thuc Duy Liu, Lin Li, Jiuyong Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title | Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title_full | Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title_fullStr | Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title_full_unstemmed | Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title_short | Estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
title_sort | estimating heterogeneous treatment effect by balancing heterogeneity and fitness |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311929/ https://www.ncbi.nlm.nih.gov/pubmed/30598067 http://dx.doi.org/10.1186/s12859-018-2521-7 |
work_keys_str_mv | AT zhangweijia estimatingheterogeneoustreatmenteffectbybalancingheterogeneityandfitness AT lethucduy estimatingheterogeneoustreatmenteffectbybalancingheterogeneityandfitness AT liulin estimatingheterogeneoustreatmenteffectbybalancingheterogeneityandfitness AT lijiuyong estimatingheterogeneoustreatmenteffectbybalancingheterogeneityandfitness |