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A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction
OBJECTIVE: To predict and explore the potential mechanism of Yinchensini decoction (YCSND) based on systemic pharmacology. METHOD: TCMSP database was searched for the active constituents and related target proteins of YCSND. Cytoscape 3.5.1 was used to construct the active ingredient-target interact...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317126/ https://www.ncbi.nlm.nih.gov/pubmed/30671125 http://dx.doi.org/10.1155/2018/2178610 |
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author | Chen, Guoming Huang, Chuyao Liu, Yunyun Chen, Tengyu Huang, Ruilan Liang, Miaozhen Zhang, Jie Xu, Hua |
author_facet | Chen, Guoming Huang, Chuyao Liu, Yunyun Chen, Tengyu Huang, Ruilan Liang, Miaozhen Zhang, Jie Xu, Hua |
author_sort | Chen, Guoming |
collection | PubMed |
description | OBJECTIVE: To predict and explore the potential mechanism of Yinchensini decoction (YCSND) based on systemic pharmacology. METHOD: TCMSP database was searched for the active constituents and related target proteins of YCSND. Cytoscape 3.5.1 was used to construct the active ingredient-target interaction of YCSND and network topology analysis, with STRING online database for protein-protein interaction (PPI) network construction and analysis; and collection from the UniProt database of target protein gene name, with the DAVID database for the gene ontology (GO) functional analysis, KEGG pathway enrichment analysis mechanism and targets of YCSND. RESULTS: The results indicate the core compounds of YCSND, namely, kaempferol, 7-Methoxy-2-methyl isoflavone, and formononetin. And its core targets are prostaglandin G/H synthase 2, estrogen receptor, Calmodulin, heat shock protein HSP 90, etc. PPI network analysis shows that the key components of the active ingredients of YCSND are JUN, TP53, MARK1, RELA, MYC, and so on. The results of the GO analysis demonstrate that extracellular space, cytosol, and plasma membrane are the main cellular components of YCSND. Its molecular functions are mainly acting on enzyme binding, protein heterodimerization activity, and drug binding. The biological process of YCSND is focused on response to drug, positive regulation of transcription from RNA polymerase II promoter, the response to ethanol, etc. KEGG results suggest that the pathways, including pathways in cancer, hepatitis B, and pancreatic cancer, play a key role in YCSND. CONCLUSION: YCSND exerts its drug effect through various signaling pathways and acts on kinds of targets. By system pharmacology, the potential role of drugs and the mechanism of action can be well predicted. |
format | Online Article Text |
id | pubmed-6317126 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-63171262019-01-22 A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction Chen, Guoming Huang, Chuyao Liu, Yunyun Chen, Tengyu Huang, Ruilan Liang, Miaozhen Zhang, Jie Xu, Hua Evid Based Complement Alternat Med Research Article OBJECTIVE: To predict and explore the potential mechanism of Yinchensini decoction (YCSND) based on systemic pharmacology. METHOD: TCMSP database was searched for the active constituents and related target proteins of YCSND. Cytoscape 3.5.1 was used to construct the active ingredient-target interaction of YCSND and network topology analysis, with STRING online database for protein-protein interaction (PPI) network construction and analysis; and collection from the UniProt database of target protein gene name, with the DAVID database for the gene ontology (GO) functional analysis, KEGG pathway enrichment analysis mechanism and targets of YCSND. RESULTS: The results indicate the core compounds of YCSND, namely, kaempferol, 7-Methoxy-2-methyl isoflavone, and formononetin. And its core targets are prostaglandin G/H synthase 2, estrogen receptor, Calmodulin, heat shock protein HSP 90, etc. PPI network analysis shows that the key components of the active ingredients of YCSND are JUN, TP53, MARK1, RELA, MYC, and so on. The results of the GO analysis demonstrate that extracellular space, cytosol, and plasma membrane are the main cellular components of YCSND. Its molecular functions are mainly acting on enzyme binding, protein heterodimerization activity, and drug binding. The biological process of YCSND is focused on response to drug, positive regulation of transcription from RNA polymerase II promoter, the response to ethanol, etc. KEGG results suggest that the pathways, including pathways in cancer, hepatitis B, and pancreatic cancer, play a key role in YCSND. CONCLUSION: YCSND exerts its drug effect through various signaling pathways and acts on kinds of targets. By system pharmacology, the potential role of drugs and the mechanism of action can be well predicted. Hindawi 2018-12-20 /pmc/articles/PMC6317126/ /pubmed/30671125 http://dx.doi.org/10.1155/2018/2178610 Text en Copyright © 2018 Guoming Chen et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Guoming Huang, Chuyao Liu, Yunyun Chen, Tengyu Huang, Ruilan Liang, Miaozhen Zhang, Jie Xu, Hua A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title | A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title_full | A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title_fullStr | A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title_full_unstemmed | A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title_short | A Network Pharmacology Approach to Uncover the Potential Mechanism of Yinchensini Decoction |
title_sort | network pharmacology approach to uncover the potential mechanism of yinchensini decoction |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317126/ https://www.ncbi.nlm.nih.gov/pubmed/30671125 http://dx.doi.org/10.1155/2018/2178610 |
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