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Improved tractography using asymmetric fibre orientation distributions

Diffusion MRI allows us to make inferences on the structural organisation of the brain by mapping water diffusion to white matter microstructure. However, such a mapping is generally ill-defined; for instance, diffusion measurements are antipodally symmetric (diffusion along x and –x are equal), whe...

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Autores principales: Bastiani, Matteo, Cottaar, Michiel, Dikranian, Krikor, Ghosh, Aurobrata, Zhang, Hui, Alexander, Daniel C., Behrens, Timothy E., Jbabdi, Saad, Sotiropoulos, Stamatios N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6318223/
https://www.ncbi.nlm.nih.gov/pubmed/28669902
http://dx.doi.org/10.1016/j.neuroimage.2017.06.050
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author Bastiani, Matteo
Cottaar, Michiel
Dikranian, Krikor
Ghosh, Aurobrata
Zhang, Hui
Alexander, Daniel C.
Behrens, Timothy E.
Jbabdi, Saad
Sotiropoulos, Stamatios N.
author_facet Bastiani, Matteo
Cottaar, Michiel
Dikranian, Krikor
Ghosh, Aurobrata
Zhang, Hui
Alexander, Daniel C.
Behrens, Timothy E.
Jbabdi, Saad
Sotiropoulos, Stamatios N.
author_sort Bastiani, Matteo
collection PubMed
description Diffusion MRI allows us to make inferences on the structural organisation of the brain by mapping water diffusion to white matter microstructure. However, such a mapping is generally ill-defined; for instance, diffusion measurements are antipodally symmetric (diffusion along x and –x are equal), whereas the distribution of fibre orientations within a voxel is generally not symmetric. Therefore, different sub-voxel patterns such as crossing, fanning, or sharp bending, cannot be distinguished by fitting a voxel-wise model to the signal. However, asymmetric fibre patterns can potentially be distinguished once spatial information from neighbouring voxels is taken into account. We propose a neighbourhood-constrained spherical deconvolution approach that is capable of inferring asymmetric fibre orientation distributions (A-fods). Importantly, we further design and implement a tractography algorithm that utilises the estimated A-fods, since the commonly used streamline tractography paradigm cannot directly take advantage of the new information. We assess performance using ultra-high resolution histology data where we can compare true orientation distributions against sub-voxel fibre patterns estimated from down-sampled data. Finally, we explore the benefits of A-fods-based tractography using in vivo data by evaluating agreement of tractography predictions with connectivity estimates made using different in-vivo modalities. The proposed approach can reliably estimate complex fibre patterns such as sharp bending and fanning, which voxel-wise approaches cannot estimate. Moreover, histology-based and in-vivo results show that the new framework allows more accurate tractography and reconstruction of maps quantifying (symmetric and asymmetric) fibre complexity.
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spelling pubmed-63182232019-01-08 Improved tractography using asymmetric fibre orientation distributions Bastiani, Matteo Cottaar, Michiel Dikranian, Krikor Ghosh, Aurobrata Zhang, Hui Alexander, Daniel C. Behrens, Timothy E. Jbabdi, Saad Sotiropoulos, Stamatios N. Neuroimage Article Diffusion MRI allows us to make inferences on the structural organisation of the brain by mapping water diffusion to white matter microstructure. However, such a mapping is generally ill-defined; for instance, diffusion measurements are antipodally symmetric (diffusion along x and –x are equal), whereas the distribution of fibre orientations within a voxel is generally not symmetric. Therefore, different sub-voxel patterns such as crossing, fanning, or sharp bending, cannot be distinguished by fitting a voxel-wise model to the signal. However, asymmetric fibre patterns can potentially be distinguished once spatial information from neighbouring voxels is taken into account. We propose a neighbourhood-constrained spherical deconvolution approach that is capable of inferring asymmetric fibre orientation distributions (A-fods). Importantly, we further design and implement a tractography algorithm that utilises the estimated A-fods, since the commonly used streamline tractography paradigm cannot directly take advantage of the new information. We assess performance using ultra-high resolution histology data where we can compare true orientation distributions against sub-voxel fibre patterns estimated from down-sampled data. Finally, we explore the benefits of A-fods-based tractography using in vivo data by evaluating agreement of tractography predictions with connectivity estimates made using different in-vivo modalities. The proposed approach can reliably estimate complex fibre patterns such as sharp bending and fanning, which voxel-wise approaches cannot estimate. Moreover, histology-based and in-vivo results show that the new framework allows more accurate tractography and reconstruction of maps quantifying (symmetric and asymmetric) fibre complexity. Academic Press 2017-09 /pmc/articles/PMC6318223/ /pubmed/28669902 http://dx.doi.org/10.1016/j.neuroimage.2017.06.050 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bastiani, Matteo
Cottaar, Michiel
Dikranian, Krikor
Ghosh, Aurobrata
Zhang, Hui
Alexander, Daniel C.
Behrens, Timothy E.
Jbabdi, Saad
Sotiropoulos, Stamatios N.
Improved tractography using asymmetric fibre orientation distributions
title Improved tractography using asymmetric fibre orientation distributions
title_full Improved tractography using asymmetric fibre orientation distributions
title_fullStr Improved tractography using asymmetric fibre orientation distributions
title_full_unstemmed Improved tractography using asymmetric fibre orientation distributions
title_short Improved tractography using asymmetric fibre orientation distributions
title_sort improved tractography using asymmetric fibre orientation distributions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6318223/
https://www.ncbi.nlm.nih.gov/pubmed/28669902
http://dx.doi.org/10.1016/j.neuroimage.2017.06.050
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