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Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains

In this study, we apply the Bayesian paradigm for parameter identification to a well-studied semi-linear reaction–diffusion system with activator-depleted reaction kinetics, posed on stationary as well as evolving domains. We provide a mathematically rigorous framework to study the inverse problem o...

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Autores principales: Campillo-Funollet, Eduard, Venkataraman, Chandrasekhar, Madzvamuse, Anotida
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6320356/
https://www.ncbi.nlm.nih.gov/pubmed/30311137
http://dx.doi.org/10.1007/s11538-018-0518-z
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author Campillo-Funollet, Eduard
Venkataraman, Chandrasekhar
Madzvamuse, Anotida
author_facet Campillo-Funollet, Eduard
Venkataraman, Chandrasekhar
Madzvamuse, Anotida
author_sort Campillo-Funollet, Eduard
collection PubMed
description In this study, we apply the Bayesian paradigm for parameter identification to a well-studied semi-linear reaction–diffusion system with activator-depleted reaction kinetics, posed on stationary as well as evolving domains. We provide a mathematically rigorous framework to study the inverse problem of finding the parameters of a reaction–diffusion system given a final spatial pattern. On the stationary domain the parameters are finite-dimensional, but on the evolving domain we consider the problem of identifying the evolution of the domain, i.e. a time-dependent function. Whilst others have considered these inverse problems using optimisation techniques, the Bayesian approach provides a rigorous mathematical framework for incorporating the prior knowledge on uncertainty in the observation and in the parameters themselves, resulting in an approximation of the full probability distribution for the parameters, given the data. Furthermore, using previously established results, we can prove well-posedness results for the inverse problem, using the well-posedness of the forward problem. Although the numerical approximation of the full probability is computationally expensive, parallelised algorithms make the problem solvable using high-performance computing.
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spelling pubmed-63203562019-01-14 Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains Campillo-Funollet, Eduard Venkataraman, Chandrasekhar Madzvamuse, Anotida Bull Math Biol Original Article In this study, we apply the Bayesian paradigm for parameter identification to a well-studied semi-linear reaction–diffusion system with activator-depleted reaction kinetics, posed on stationary as well as evolving domains. We provide a mathematically rigorous framework to study the inverse problem of finding the parameters of a reaction–diffusion system given a final spatial pattern. On the stationary domain the parameters are finite-dimensional, but on the evolving domain we consider the problem of identifying the evolution of the domain, i.e. a time-dependent function. Whilst others have considered these inverse problems using optimisation techniques, the Bayesian approach provides a rigorous mathematical framework for incorporating the prior knowledge on uncertainty in the observation and in the parameters themselves, resulting in an approximation of the full probability distribution for the parameters, given the data. Furthermore, using previously established results, we can prove well-posedness results for the inverse problem, using the well-posedness of the forward problem. Although the numerical approximation of the full probability is computationally expensive, parallelised algorithms make the problem solvable using high-performance computing. Springer US 2018-10-11 2019 /pmc/articles/PMC6320356/ /pubmed/30311137 http://dx.doi.org/10.1007/s11538-018-0518-z Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Campillo-Funollet, Eduard
Venkataraman, Chandrasekhar
Madzvamuse, Anotida
Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title_full Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title_fullStr Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title_full_unstemmed Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title_short Bayesian Parameter Identification for Turing Systems on Stationary and Evolving Domains
title_sort bayesian parameter identification for turing systems on stationary and evolving domains
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6320356/
https://www.ncbi.nlm.nih.gov/pubmed/30311137
http://dx.doi.org/10.1007/s11538-018-0518-z
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