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Experimental evidence of symmetry breaking of transition-path times

While thermal rates of state transitions in classical systems have been studied for almost a century, associated transition-path times have only recently received attention. Uphill and downhill transition paths between states at different free energies should be statistically indistinguishable. Here...

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Autores principales: Gladrow, J., Ribezzi-Crivellari, M., Ritort, F., Keyser, U. F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6320364/
https://www.ncbi.nlm.nih.gov/pubmed/30610184
http://dx.doi.org/10.1038/s41467-018-07873-9
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author Gladrow, J.
Ribezzi-Crivellari, M.
Ritort, F.
Keyser, U. F.
author_facet Gladrow, J.
Ribezzi-Crivellari, M.
Ritort, F.
Keyser, U. F.
author_sort Gladrow, J.
collection PubMed
description While thermal rates of state transitions in classical systems have been studied for almost a century, associated transition-path times have only recently received attention. Uphill and downhill transition paths between states at different free energies should be statistically indistinguishable. Here, we systematically investigate transition-path-time symmetry and report evidence of its breakdown on the molecular- and meso-scale out of equilibrium. In automated Brownian dynamics experiments, we establish first-passage-time symmetries of colloids driven by femtoNewton forces in holographically-created optical landscapes confined within microchannels. Conversely, we show that transitions which couple in a path-dependent manner to fluctuating forces exhibit asymmetry. We reproduce this asymmetry in folding transitions of DNA-hairpins driven out of equilibrium and suggest a topological mechanism of symmetry breakdown. Our results are relevant to measurements that capture a single coordinate in a multidimensional free energy landscape, as encountered in electrophysiology and single-molecule fluorescence experiments.
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spelling pubmed-63203642019-01-07 Experimental evidence of symmetry breaking of transition-path times Gladrow, J. Ribezzi-Crivellari, M. Ritort, F. Keyser, U. F. Nat Commun Article While thermal rates of state transitions in classical systems have been studied for almost a century, associated transition-path times have only recently received attention. Uphill and downhill transition paths between states at different free energies should be statistically indistinguishable. Here, we systematically investigate transition-path-time symmetry and report evidence of its breakdown on the molecular- and meso-scale out of equilibrium. In automated Brownian dynamics experiments, we establish first-passage-time symmetries of colloids driven by femtoNewton forces in holographically-created optical landscapes confined within microchannels. Conversely, we show that transitions which couple in a path-dependent manner to fluctuating forces exhibit asymmetry. We reproduce this asymmetry in folding transitions of DNA-hairpins driven out of equilibrium and suggest a topological mechanism of symmetry breakdown. Our results are relevant to measurements that capture a single coordinate in a multidimensional free energy landscape, as encountered in electrophysiology and single-molecule fluorescence experiments. Nature Publishing Group UK 2019-01-04 /pmc/articles/PMC6320364/ /pubmed/30610184 http://dx.doi.org/10.1038/s41467-018-07873-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Gladrow, J.
Ribezzi-Crivellari, M.
Ritort, F.
Keyser, U. F.
Experimental evidence of symmetry breaking of transition-path times
title Experimental evidence of symmetry breaking of transition-path times
title_full Experimental evidence of symmetry breaking of transition-path times
title_fullStr Experimental evidence of symmetry breaking of transition-path times
title_full_unstemmed Experimental evidence of symmetry breaking of transition-path times
title_short Experimental evidence of symmetry breaking of transition-path times
title_sort experimental evidence of symmetry breaking of transition-path times
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6320364/
https://www.ncbi.nlm.nih.gov/pubmed/30610184
http://dx.doi.org/10.1038/s41467-018-07873-9
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