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High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing

The primary objective of this study was to realize the large-scale discovery of conotoxin sequences from different organs (including the venom duct, venom bulb and salivary gland) of the vermivorous Oak cone snail, Conus quercinus. Using high-throughput transcriptome sequencing, we identified 133 pu...

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Autores principales: Gao, Bingmiao, Peng, Chao, Zhu, Yabing, Sun, Yuhui, Zhao, Tian, Huang, Yu, Shi, Qiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321112/
https://www.ncbi.nlm.nih.gov/pubmed/30563163
http://dx.doi.org/10.3390/ijms19123901
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author Gao, Bingmiao
Peng, Chao
Zhu, Yabing
Sun, Yuhui
Zhao, Tian
Huang, Yu
Shi, Qiong
author_facet Gao, Bingmiao
Peng, Chao
Zhu, Yabing
Sun, Yuhui
Zhao, Tian
Huang, Yu
Shi, Qiong
author_sort Gao, Bingmiao
collection PubMed
description The primary objective of this study was to realize the large-scale discovery of conotoxin sequences from different organs (including the venom duct, venom bulb and salivary gland) of the vermivorous Oak cone snail, Conus quercinus. Using high-throughput transcriptome sequencing, we identified 133 putative conotoxins that belong to 34 known superfamilies, of which nine were previously reported while the remaining 124 were novel conotoxins, with 17 in new and unassigned conotoxin groups. A-, O(1)-, M-, and I(2)- superfamilies were the most abundant, and the cysteine frameworks XIII and VIII were observed for the first time in the A- and I(2)-superfamilies. The transcriptome data from the venom duct, venom bulb and salivary gland showed considerable inter-organizational variations. Each organ had many exclusive conotoxins, and only seven of all the inferred mature peptides were common in the three organs. As expected, most of the identified conotoxins were synthesized in the venom duct at relatively high levels; however, a number of conotoxins were also identified in the venom bulb and the salivary gland with very low transcription levels. Therefore, various organs have different conotoxins with high diversity, suggesting greater contributions from several organs to the high-throughput discovery of new conotoxins for future drug development.
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spelling pubmed-63211122019-01-07 High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing Gao, Bingmiao Peng, Chao Zhu, Yabing Sun, Yuhui Zhao, Tian Huang, Yu Shi, Qiong Int J Mol Sci Article The primary objective of this study was to realize the large-scale discovery of conotoxin sequences from different organs (including the venom duct, venom bulb and salivary gland) of the vermivorous Oak cone snail, Conus quercinus. Using high-throughput transcriptome sequencing, we identified 133 putative conotoxins that belong to 34 known superfamilies, of which nine were previously reported while the remaining 124 were novel conotoxins, with 17 in new and unassigned conotoxin groups. A-, O(1)-, M-, and I(2)- superfamilies were the most abundant, and the cysteine frameworks XIII and VIII were observed for the first time in the A- and I(2)-superfamilies. The transcriptome data from the venom duct, venom bulb and salivary gland showed considerable inter-organizational variations. Each organ had many exclusive conotoxins, and only seven of all the inferred mature peptides were common in the three organs. As expected, most of the identified conotoxins were synthesized in the venom duct at relatively high levels; however, a number of conotoxins were also identified in the venom bulb and the salivary gland with very low transcription levels. Therefore, various organs have different conotoxins with high diversity, suggesting greater contributions from several organs to the high-throughput discovery of new conotoxins for future drug development. MDPI 2018-12-05 /pmc/articles/PMC6321112/ /pubmed/30563163 http://dx.doi.org/10.3390/ijms19123901 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gao, Bingmiao
Peng, Chao
Zhu, Yabing
Sun, Yuhui
Zhao, Tian
Huang, Yu
Shi, Qiong
High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title_full High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title_fullStr High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title_full_unstemmed High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title_short High Throughput Identification of Novel Conotoxins from the Vermivorous Oak Cone Snail (Conus quercinus) by Transcriptome Sequencing
title_sort high throughput identification of novel conotoxins from the vermivorous oak cone snail (conus quercinus) by transcriptome sequencing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321112/
https://www.ncbi.nlm.nih.gov/pubmed/30563163
http://dx.doi.org/10.3390/ijms19123901
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