Cargando…

A QM/MM Derived Polarizable Water Model for Molecular Simulation

In this work, we propose an improved QM/MM-based strategy to determine condensed-phase polarizabilities and we use this approach to optimize a new and simple polarizable four-site water model for classical molecular simulation. For the determination of the model value for the polarizability from QM/...

Descripción completa

Detalles Bibliográficos
Autores principales: Visscher, Koen M., Swope, William C., Geerke, Daan P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321318/
https://www.ncbi.nlm.nih.gov/pubmed/30501058
http://dx.doi.org/10.3390/molecules23123131
_version_ 1783385413635801088
author Visscher, Koen M.
Swope, William C.
Geerke, Daan P.
author_facet Visscher, Koen M.
Swope, William C.
Geerke, Daan P.
author_sort Visscher, Koen M.
collection PubMed
description In this work, we propose an improved QM/MM-based strategy to determine condensed-phase polarizabilities and we use this approach to optimize a new and simple polarizable four-site water model for classical molecular simulation. For the determination of the model value for the polarizability from QM/MM, we show that our proposed consensus-fitting strategy significantly reduces the uncertainty in calculated polarizabilities in cases where the size of the local external electric field is small. By fitting electrostatic, polarization and dispersion properties of our water model based on quantum and/or combined QM/MM calculations, only a single model parameter (describing exchange repulsion) is left for empirical calibration. The resulting model performs well in describing relevant pure-liquid thermodynamic and transport properties, which illustrates the merit of our approach to minimize the number of free variables in our model.
format Online
Article
Text
id pubmed-6321318
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-63213182019-01-14 A QM/MM Derived Polarizable Water Model for Molecular Simulation Visscher, Koen M. Swope, William C. Geerke, Daan P. Molecules Article In this work, we propose an improved QM/MM-based strategy to determine condensed-phase polarizabilities and we use this approach to optimize a new and simple polarizable four-site water model for classical molecular simulation. For the determination of the model value for the polarizability from QM/MM, we show that our proposed consensus-fitting strategy significantly reduces the uncertainty in calculated polarizabilities in cases where the size of the local external electric field is small. By fitting electrostatic, polarization and dispersion properties of our water model based on quantum and/or combined QM/MM calculations, only a single model parameter (describing exchange repulsion) is left for empirical calibration. The resulting model performs well in describing relevant pure-liquid thermodynamic and transport properties, which illustrates the merit of our approach to minimize the number of free variables in our model. MDPI 2018-11-29 /pmc/articles/PMC6321318/ /pubmed/30501058 http://dx.doi.org/10.3390/molecules23123131 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Visscher, Koen M.
Swope, William C.
Geerke, Daan P.
A QM/MM Derived Polarizable Water Model for Molecular Simulation
title A QM/MM Derived Polarizable Water Model for Molecular Simulation
title_full A QM/MM Derived Polarizable Water Model for Molecular Simulation
title_fullStr A QM/MM Derived Polarizable Water Model for Molecular Simulation
title_full_unstemmed A QM/MM Derived Polarizable Water Model for Molecular Simulation
title_short A QM/MM Derived Polarizable Water Model for Molecular Simulation
title_sort qm/mm derived polarizable water model for molecular simulation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321318/
https://www.ncbi.nlm.nih.gov/pubmed/30501058
http://dx.doi.org/10.3390/molecules23123131
work_keys_str_mv AT visscherkoenm aqmmmderivedpolarizablewatermodelformolecularsimulation
AT swopewilliamc aqmmmderivedpolarizablewatermodelformolecularsimulation
AT geerkedaanp aqmmmderivedpolarizablewatermodelformolecularsimulation
AT visscherkoenm qmmmderivedpolarizablewatermodelformolecularsimulation
AT swopewilliamc qmmmderivedpolarizablewatermodelformolecularsimulation
AT geerkedaanp qmmmderivedpolarizablewatermodelformolecularsimulation