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An Efficient Classifier for Alzheimer’s Disease Genes Identification

Alzheimer’s disease (AD) is considered to one of 10 key diseases leading to death in humans. AD is considered the main cause of brain degeneration, and will lead to dementia. It is beneficial for affected patients to be diagnosed with the disease at an early stage so that efforts to manage the patie...

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Autores principales: Xu, Lei, Liang, Guangmin, Liao, Changrui, Chen, Gin-Den, Chang, Chi-Chang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321377/
https://www.ncbi.nlm.nih.gov/pubmed/30501121
http://dx.doi.org/10.3390/molecules23123140
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author Xu, Lei
Liang, Guangmin
Liao, Changrui
Chen, Gin-Den
Chang, Chi-Chang
author_facet Xu, Lei
Liang, Guangmin
Liao, Changrui
Chen, Gin-Den
Chang, Chi-Chang
author_sort Xu, Lei
collection PubMed
description Alzheimer’s disease (AD) is considered to one of 10 key diseases leading to death in humans. AD is considered the main cause of brain degeneration, and will lead to dementia. It is beneficial for affected patients to be diagnosed with the disease at an early stage so that efforts to manage the patient can begin as soon as possible. Most existing protocols diagnose AD by way of magnetic resonance imaging (MRI). However, because the size of the images produced is large, existing techniques that employ MRI technology are expensive and time-consuming to perform. With this in mind, in the current study, AD is predicted instead by the use of a support vector machine (SVM) method based on gene-coding protein sequence information. In our proposed method, the frequency of two consecutive amino acids is used to describe the sequence information. The accuracy of the proposed method for identifying AD is 85.7%, which is demonstrated by the obtained experimental results. The experimental results also show that the sequence information of gene-coding proteins can be used to predict AD.
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spelling pubmed-63213772019-01-14 An Efficient Classifier for Alzheimer’s Disease Genes Identification Xu, Lei Liang, Guangmin Liao, Changrui Chen, Gin-Den Chang, Chi-Chang Molecules Article Alzheimer’s disease (AD) is considered to one of 10 key diseases leading to death in humans. AD is considered the main cause of brain degeneration, and will lead to dementia. It is beneficial for affected patients to be diagnosed with the disease at an early stage so that efforts to manage the patient can begin as soon as possible. Most existing protocols diagnose AD by way of magnetic resonance imaging (MRI). However, because the size of the images produced is large, existing techniques that employ MRI technology are expensive and time-consuming to perform. With this in mind, in the current study, AD is predicted instead by the use of a support vector machine (SVM) method based on gene-coding protein sequence information. In our proposed method, the frequency of two consecutive amino acids is used to describe the sequence information. The accuracy of the proposed method for identifying AD is 85.7%, which is demonstrated by the obtained experimental results. The experimental results also show that the sequence information of gene-coding proteins can be used to predict AD. MDPI 2018-11-29 /pmc/articles/PMC6321377/ /pubmed/30501121 http://dx.doi.org/10.3390/molecules23123140 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xu, Lei
Liang, Guangmin
Liao, Changrui
Chen, Gin-Den
Chang, Chi-Chang
An Efficient Classifier for Alzheimer’s Disease Genes Identification
title An Efficient Classifier for Alzheimer’s Disease Genes Identification
title_full An Efficient Classifier for Alzheimer’s Disease Genes Identification
title_fullStr An Efficient Classifier for Alzheimer’s Disease Genes Identification
title_full_unstemmed An Efficient Classifier for Alzheimer’s Disease Genes Identification
title_short An Efficient Classifier for Alzheimer’s Disease Genes Identification
title_sort efficient classifier for alzheimer’s disease genes identification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321377/
https://www.ncbi.nlm.nih.gov/pubmed/30501121
http://dx.doi.org/10.3390/molecules23123140
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